Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 0.0e+00 1087.4 557 100.0
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 2.3e-275 951.8 562 87.5
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.4e-271 937.9 562 86.5
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.3e-257 892.9 560 82.5
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.8e-236 822.0 553 77.6
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.7e-231 805.4 566 73.1
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.5e-231 805.1 566 73.1
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.3e-230 803.1 560 74.3
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 9.5e-229 797.0 571 72.3
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.7e-225 786.2 494 79.8
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 2.9e-225 785.4 509 77.0
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.3e-225 783.9 556 72.5
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.3e-225 783.9 556 72.5
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.9e-224 782.7 554 72.6
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.4e-224 782.3 506 77.7
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.4e-224 782.3 550 73.3
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.4e-224 782.3 559 72.1
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.1e-224 781.6 550 73.1
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 5.4e-224 781.2 557 72.2
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.0e-223 779.2 494 78.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 2.7e-223 778.9 527 74.6
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 3.5e-223 778.5 494 77.3
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.0e-222 776.9 490 79.8
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 2.3e-222 775.8 549 72.1
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 4.3e-221 771.5 509 75.4
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 6.2e-220 767.7 561 71.3
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 8.1e-220 767.3 537 72.3
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.8e-219 766.1 492 76.8
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.8e-219 766.1 538 72.1
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.9e-219 763.8 490 76.7
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.2e-218 763.5 491 77.4
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.0e-218 762.7 539 72.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 5.8e-218 761.1 534 72.7
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 9.8e-218 760.4 489 76.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 9.8e-218 760.4 533 73.2
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 4.9e-217 758.1 547 72.0
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 4.9e-217 758.1 492 76.6
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 6.4e-217 757.7 567 69.3
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.1e-216 756.9 508 74.6
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.4e-216 755.7 572 68.2
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 7.1e-216 754.2 542 70.1
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 7.1e-216 754.2 502 74.7
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 7.1e-216 754.2 487 75.6
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 7.1e-216 754.2 505 75.2
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.1e-215 752.7 533 71.3
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 7.8e-215 750.7 560 68.0
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 7.8e-215 750.7 563 69.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 7.8e-215 750.7 494 75.3
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.0e-214 750.4 490 75.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 6.6e-214 747.7 521 71.4
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 8.6e-214 747.3 570 68.1
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.1e-213 746.9 491 74.9
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 3.3e-213 745.3 502 72.9
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 4.3e-213 745.0 490 74.5
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 4.3e-213 745.0 492 73.0
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 5.6e-213 744.6 523 71.7
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 5.6e-213 744.6 494 76.3
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.2e-212 743.4 518 71.6
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.6e-212 743.0 494 75.1
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.6e-212 743.0 565 67.3
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 2.1e-212 742.7 523 71.5
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 6.2e-212 741.1 500 74.2
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 8.1e-212 740.7 541 68.6
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 1.1e-211 740.3 500 74.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.1e-211 740.3 490 74.1
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.4e-211 740.0 523 71.1
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.4e-211 740.0 550 69.8
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.3e-211 739.2 523 71.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 5.2e-211 738.0 523 71.7
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.6e-210 734.2 546 68.5
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.6e-210 734.2 559 68.2
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 9.9e-210 733.8 484 74.6
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.9e-210 733.8 545 67.9
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.2e-209 732.6 535 69.0
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.9e-209 732.3 496 73.4
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 2.4e-208 729.2 470 75.7
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.3e-206 722.6 492 73.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.9e-206 721.8 492 72.8
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 5.1e-206 721.5 470 74.3
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.3e-205 718.4 495 71.3
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 4.0e-203 711.8 565 65.0
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 8.9e-203 710.7 463 74.9
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 2.6e-202 709.1 528 67.8
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.4e-202 708.4 478 72.8
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 4.4e-202 708.4 478 72.8
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.4e-202 708.4 525 68.6
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 6.4e-201 704.5 479 72.7
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.2e-200 701.8 479 72.2
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.5e-199 698.7 477 72.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 5.1e-198 694.9 544 65.6
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.1e-198 694.9 443 78.3
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.7e-198 694.1 440 77.5
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.9e-197 693.0 450 76.9
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.4e-195 686.8 546 65.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.8e-194 681.4 490 71.8
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 2.9e-193 679.1 539 65.3
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 7.9e-191 671.0 494 70.2
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.7e-190 669.8 411 78.6
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 3.6e-188 662.1 482 66.6
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.2e-185 652.9 475 64.0
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.4e-184 650.2 487 64.7
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.2e-183 647.1 487 64.1
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.2e-183 647.1 487 64.3
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 7.6e-178 627.9 550 59.8
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 2.9e-177 625.9 460 65.9
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 6.7e-174 614.8 478 61.9
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 1.3e-172 610.5 469 62.5
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.8e-172 609.4 545 61.1
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.2e-170 604.0 479 65.8
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 4.2e-168 595.5 448 68.5
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.6e-167 593.6 446 69.3
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 6.9e-163 578.2 488 60.0
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 7.4e-157 558.1 480 55.0
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.2e-156 556.6 479 56.2
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.5e-154 550.4 474 55.9
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 5.1e-150 535.4 482 55.6
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 6.3e-140 501.9 434 61.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 5.3e-139 498.8 476 51.3
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.4e-131 474.2 320 74.7
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.2e-129 466.8 383 64.2
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 6.8e-126 455.3 333 69.1
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 9.8e-125 451.4 502 46.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.5e-117 427.6 500 45.2
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 4.3e-64 250.0 215 59.1
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.5e-61 241.5 498 30.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.6e-53 214.2 148 70.3
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.3e-40 170.6 428 27.8
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 6.3e-39 166.4 102 76.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 3.8e-28 130.6 72 80.6
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.8e-23 114.4 80 75.0
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 6.3e-15 86.7 484 22.5
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.4e-14 85.5 62 69.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 4.7e-10 70.5 411 23.6
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 7.0e-06 56.6 28 85.7


User provided reference genes

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