Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 0.0e+00 1238.8 616 100.0
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 0.0e+00 1156.0 618 92.7
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 0.0e+00 1120.5 616 89.6
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 0.0e+00 1110.5 617 89.0
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 3.7e-290 1001.1 623 79.1
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.9e-286 988.8 626 77.6
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.6e-277 957.6 622 75.7
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.4e-276 956.1 624 75.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.5e-275 952.6 621 76.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 5.7e-275 950.7 623 75.6
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 2.2e-274 948.7 624 76.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 4.8e-274 947.6 623 75.4
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 4.5e-240 834.7 629 66.6
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.7e-239 832.8 624 66.0
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.6e-237 825.1 625 66.1
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 8.0e-237 823.9 624 65.4
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 8.9e-236 820.5 626 65.3
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.2e-235 820.1 625 64.6
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.0e-232 809.3 626 63.7
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.5e-232 808.5 625 64.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.3e-230 800.8 629 63.8
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 4.7e-229 798.1 625 64.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 5.2e-228 794.7 627 63.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 4.4e-227 791.6 620 63.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.2e-225 785.4 628 62.7
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 4.6e-224 781.6 605 64.3
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.3e-223 779.2 626 62.6
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 5.0e-223 778.1 632 62.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 8.6e-223 777.3 625 62.4
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.3e-222 775.4 632 62.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.4e-220 770.0 627 62.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 4.0e-220 768.5 627 61.9
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 2.0e-219 766.1 629 62.5
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.4e-219 765.0 626 62.9
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-218 763.5 626 62.8
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 4.9e-218 761.5 628 61.1
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.2e-216 756.9 625 61.1
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 6.0e-216 754.6 629 60.4
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 6.0e-216 754.6 628 61.3
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.0e-215 753.8 626 61.3
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.0e-215 753.8 657 59.2
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.6e-213 745.3 627 60.8
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.7e-213 745.0 627 59.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 6.8e-212 741.1 629 60.6
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 6.8e-212 741.1 622 60.8
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 6.8e-212 741.1 635 60.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.0e-211 739.6 627 59.3
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.7e-210 736.5 484 76.7
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.2e-210 736.1 624 59.8
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 4.1e-209 731.9 625 59.8
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 5.4e-209 731.5 627 60.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.2e-208 730.3 623 59.9
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.6e-208 729.9 693 55.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.5e-208 728.8 626 59.7
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 4.6e-208 728.4 636 60.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.3e-207 726.1 626 59.7
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.9e-207 725.3 625 60.5
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 6.6e-207 724.5 626 60.2
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 8.6e-207 724.2 625 60.5
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.9e-206 723.0 628 59.4
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 5.6e-206 721.5 625 60.2
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 6.2e-205 718.0 625 58.6
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 5.2e-204 714.9 626 59.1
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.5e-203 713.4 640 59.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.6e-203 712.6 623 58.6
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 9.9e-203 710.7 626 58.9
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.3e-202 710.3 626 58.8
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.8e-202 708.8 641 57.3
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 4.9e-202 708.4 625 58.6
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.4e-201 706.8 570 62.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.4e-201 706.1 685 54.7
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 3.2e-201 705.7 626 58.5
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 7.1e-201 704.5 626 58.8
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 7.1e-201 704.5 624 58.5
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 7.1e-201 704.5 633 57.7
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 9.3e-201 704.1 630 57.3
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 2.1e-200 703.0 624 57.9
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 4.3e-198 695.3 625 57.9
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.2e-197 691.4 624 57.5
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.4e-196 689.5 627 57.3
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.2e-195 687.2 620 57.7
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 4.4e-195 685.3 532 63.3
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.3e-194 683.7 624 56.4
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.9e-194 682.6 621 54.9
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.2e-192 677.2 624 54.8
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 3.9e-191 672.2 629 55.8
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.4e-188 662.9 627 56.5
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.5e-187 660.2 635 52.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.5e-187 660.2 623 54.4
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 2.0e-187 659.8 626 54.5
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 4.6e-184 648.7 587 56.7
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.3e-183 647.1 624 53.8
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.9e-183 645.6 663 54.0
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.7e-183 644.4 629 54.1
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 5.6e-182 641.7 664 51.5
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 2.5e-177 626.3 532 60.5
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 8.7e-175 617.8 620 52.4
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 9.0e-164 581.3 627 49.8
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.9e-162 576.2 646 47.2
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.9e-162 576.2 646 47.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 8.5e-162 574.7 642 47.4
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 9.4e-161 571.2 618 49.5
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 2.3e-159 566.6 623 50.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.9e-155 552.0 620 50.2
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 4.7e-152 542.3 612 49.0
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.0e-143 513.1 636 45.8
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 7.7e-139 498.4 485 52.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 5.7e-134 482.3 650 42.5
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.5e-131 472.6 635 40.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.9e-129 467.2 403 57.8
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.6e-128 463.0 384 58.3
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.9e-115 419.1 577 40.4
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-110 404.8 404 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.3e-109 401.4 492 44.7
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.7e-104 382.9 407 51.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 6.0e-83 312.8 217 69.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 8.1e-80 302.4 754 29.8
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 5.5e-68 263.1 623 30.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.7e-67 260.8 436 37.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.9e-60 238.0 266 48.9
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.3e-56 223.0 247 47.4
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 4.5e-54 216.9 401 33.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.9e-53 214.2 144 73.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-48 198.7 130 74.6
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.5e-46 191.8 164 60.4
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-36 157.9 95 76.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.6e-35 154.1 646 25.2
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.2e-32 144.8 162 45.7
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.7e-29 135.2 103 66.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.9e-29 134.4 163 44.2
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.7e-27 127.9 114 54.4
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 5.0e-21 107.1 170 37.1
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.1e-20 105.9 81 71.6
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.1e-19 100.1 119 47.1
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 5.2e-18 97.1 127 44.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-16 92.4 158 34.8
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 5.4e-15 87.0 74 56.8
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.0e-13 82.8 65 69.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.0e-13 82.8 163 33.1
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.0e-13 80.5 52 69.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 2.8e-11 74.7 110 42.7
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.1e-11 73.6 66 54.5
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.4e-10 72.4 75 58.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 8.9e-10 69.7 69 53.6
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 3.4e-09 67.8 47 66.0
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 5.7e-09 67.0 84 46.4
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.5e-09 66.6 49 59.2
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 9.8e-09 66.2 46 65.2
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.7e-06 58.2 37 64.9


User provided reference genes

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