Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 0.0e+00 1389.0 710 100.0
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 0.0e+00 1276.9 709 88.9
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 0.0e+00 1276.2 710 89.4
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 0.0e+00 1274.6 738 86.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 0.0e+00 1222.2 709 84.1
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 0.0e+00 1212.6 710 83.8
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 0.0e+00 1196.0 709 82.4
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 0.0e+00 1189.9 709 81.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 0.0e+00 1151.0 708 79.9
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 0.0e+00 1129.8 710 79.9
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 0.0e+00 1120.5 708 78.4
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 2.2e-286 988.8 713 68.0
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.1e-285 986.5 710 68.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.6e-284 982.6 711 67.2
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.6e-284 982.6 712 67.1
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 8.5e-283 976.9 718 66.7
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 3.2e-282 974.9 680 70.0
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 8.8e-280 966.8 713 67.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.5e-279 966.1 716 66.9
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.5e-279 966.1 712 65.7
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 9.8e-279 963.4 710 65.9
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 3.1e-277 958.4 686 68.2
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 9.1e-277 956.8 737 63.9
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 1.0e-275 953.4 710 66.1
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.6e-273 946.0 710 65.8
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 8.8e-272 940.3 714 65.4
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 1.2e-271 939.9 710 65.9
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.5e-271 939.5 711 63.6
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.4e-271 938.3 775 60.4
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 4.4e-271 937.9 713 64.9
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.4e-269 932.2 704 64.1
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 9.2e-269 930.2 758 62.9
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.5e-268 928.3 713 65.2
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 5.9e-268 927.5 711 62.7
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.1e-266 923.3 718 63.9
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.1e-266 923.3 711 62.3
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 3.6e-265 918.3 703 64.0
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.5e-263 912.9 709 62.8
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.6e-263 912.1 714 63.6
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.6e-263 912.1 716 62.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.3e-262 909.8 721 63.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 4.9e-262 907.9 711 63.9
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 7.0e-261 904.0 711 61.2
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 9.2e-261 903.7 711 61.2
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 1.6e-260 902.9 712 61.7
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.0e-260 902.5 670 66.1
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 4.6e-260 901.4 711 61.9
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 4.6e-260 901.4 712 64.3
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 5.9e-260 901.0 704 63.5
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.0e-259 900.2 711 61.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 1.3e-259 899.8 666 65.0
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.7e-259 899.4 711 60.9
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.1e-258 896.7 711 60.9
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.9e-258 896.0 713 61.6
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.5e-258 895.6 713 60.3
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.3e-258 894.8 712 61.4
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 9.5e-258 893.6 681 65.2
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 2.1e-257 892.5 711 60.5
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 3.6e-257 891.7 711 60.5
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 6.2e-257 891.0 698 61.6
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 8.0e-257 890.6 709 62.2
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.4e-256 889.8 711 60.8
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.5e-255 886.3 691 63.1
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 4.4e-255 884.8 713 60.3
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 5.8e-255 884.4 677 64.8
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.4e-253 877.9 730 60.1
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 2.0e-252 875.9 658 65.2
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 6.0e-252 874.4 730 60.0
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.6e-251 870.5 680 64.1
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.9e-250 869.4 732 60.1
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 2.5e-250 869.0 711 60.1
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 5.2e-248 861.3 616 67.7
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.1e-245 850.9 709 61.1
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.1e-240 835.5 705 60.6
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 2.9e-238 828.9 651 62.8
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.2e-236 823.5 674 59.6
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.8e-236 820.8 681 60.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 1.0e-235 820.5 718 58.1
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 3.3e-234 815.5 681 59.8
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 5.6e-234 814.7 713 58.8
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.2e-230 802.7 757 55.7
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 3.2e-229 798.9 566 67.5
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 9.3e-229 797.3 690 59.0
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.4e-221 773.5 682 57.9
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 4.2e-221 771.9 998 44.4
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.7e-220 769.2 524 71.0
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.5e-218 762.7 497 74.0
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 5.6e-218 761.5 428 85.7
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 4.0e-216 755.4 616 61.9
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.5e-210 736.1 629 59.1
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.5e-210 736.1 710 54.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 6.0e-204 714.9 686 52.3
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.9e-203 712.2 570 62.5
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.7e-203 711.4 516 67.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.3e-193 680.6 720 51.5
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 7.9e-188 661.4 579 56.1
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 4.4e-186 655.6 383 86.2
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 9.1e-184 647.9 642 52.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 3.0e-171 606.3 656 47.4
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.8e-168 597.0 332 91.0
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 2.9e-166 589.7 676 45.3
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 7.0e-152 542.0 421 59.9
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.5e-149 533.5 358 71.2
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.5e-141 506.9 398 61.6
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 8.3e-129 465.3 523 44.6
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 5.8e-114 416.0 400 54.8
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.0e-106 391.0 438 45.4
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.2e-103 381.7 319 58.6
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 3.5e-103 380.2 283 65.7
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 6.0e-95 352.8 610 38.0
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 8.7e-94 349.0 279 62.0
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.7e-89 334.7 357 48.7
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.9e-85 321.2 277 59.6
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.9e-83 312.8 237 62.0
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 5.5e-80 303.1 233 65.7
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 7.9e-71 272.7 386 39.4
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 5.7e-69 266.5 660 31.5
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.7e-68 263.8 282 50.7
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 9.4e-64 249.2 432 35.2
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 6.3e-60 236.5 550 30.0
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.3e-41 174.9 123 68.3
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.9e-40 171.8 273 36.6
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 5.7e-37 160.2 213 44.6
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.1e-35 156.0 117 70.1
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.8e-35 155.2 221 42.5
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.1e-35 154.1 137 57.7
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.6e-34 152.1 358 33.2
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-33 149.1 218 42.7
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.7e-33 148.7 103 68.9
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.8e-21 107.1 74 66.2
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.5e-21 106.7 121 49.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 7.0e-19 100.1 82 53.7
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.1e-18 98.6 421 24.0
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.9e-16 92.0 113 43.4
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.9e-16 92.0 166 40.4
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.9e-16 92.0 89 50.6
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.8e-14 85.5 64 62.5
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.3e-14 85.1 46 78.3
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.1e-14 84.7 65 61.5
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.0e-14 84.3 58 69.0
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.8e-13 80.5 380 22.6
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.5e-13 80.1 124 41.1
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 46 73.9
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 3.5e-10 71.2 58 51.7
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.3e-08 64.7 222 27.0
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 4.3e-08 64.3 168 30.4
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 4.7e-07 60.8 42 64.3


User provided reference genes

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