Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 1.6e-69 266.2 154 100.0
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.1e-61 239.2 133 95.5
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 6.1e-61 237.7 133 94.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 6.1e-61 237.7 133 94.7
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.0e-60 236.9 133 94.7
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.5e-59 233.0 133 92.5
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 2.6e-59 232.3 133 91.7
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 4.4e-59 231.5 133 91.0
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.7e-59 231.1 133 90.2
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 7.5e-59 230.7 133 91.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 9.8e-59 230.3 133 90.2
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.3e-58 229.9 133 91.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.7e-58 229.6 133 91.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.7e-58 229.6 133 90.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.7e-58 229.6 133 90.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.2e-58 229.2 133 90.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.2e-58 229.2 133 90.2
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.9e-58 228.8 133 90.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.9e-58 228.8 133 90.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.7e-58 228.4 133 89.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.7e-58 228.4 133 88.7
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.9e-58 228.0 133 89.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 4.9e-58 228.0 133 90.2
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.9e-58 228.0 133 89.5
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.3e-58 227.6 133 89.5
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 6.3e-58 227.6 133 88.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 8.3e-58 227.3 133 88.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.1e-57 226.9 133 89.5
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-57 226.5 133 89.5
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-57 226.5 133 89.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.4e-57 226.5 133 88.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.4e-57 226.5 133 89.5
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.8e-57 226.1 133 89.5
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.8e-57 226.1 133 88.0
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.4e-57 225.7 133 88.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 3.2e-57 225.3 133 88.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 4.1e-57 224.9 133 88.0
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.1e-57 224.9 132 87.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.1e-57 224.9 132 87.1
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.1e-57 224.9 132 87.1
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.1e-57 224.9 133 88.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.1e-57 224.9 133 88.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.4e-57 224.6 133 86.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 5.4e-57 224.6 133 88.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.4e-57 224.6 133 88.7
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 5.4e-57 224.6 133 88.7
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 7.0e-57 224.2 133 86.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 7.0e-57 224.2 133 88.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.0e-57 224.2 132 87.1
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.2e-57 223.8 133 87.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 9.2e-57 223.8 132 87.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.2e-56 223.4 133 87.2
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.6e-56 223.0 133 87.2
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.6e-56 223.0 133 87.2
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.6e-56 223.0 133 87.2
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-56 223.0 133 86.5
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.6e-56 223.0 133 86.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.0e-56 222.6 137 86.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.0e-56 222.6 133 88.0
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.0e-56 222.6 133 85.7
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.7e-56 222.2 133 86.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.7e-56 222.2 133 88.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.5e-56 221.9 133 86.5
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.5e-56 221.9 133 85.7
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.5e-56 221.9 133 85.0
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 4.6e-56 221.5 133 87.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.6e-56 221.5 133 85.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 5.9e-56 221.1 132 87.1
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 5.9e-56 221.1 133 85.7
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.9e-56 221.1 132 85.6
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 5.9e-56 221.1 133 85.7
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 7.8e-56 220.7 133 87.2
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.7e-55 219.5 133 85.7
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.7e-55 219.5 133 85.7
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.3e-55 219.2 133 85.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.9e-55 218.8 133 85.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 2.9e-55 218.8 133 86.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.9e-55 218.8 138 86.2
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.9e-55 218.4 133 85.7
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.9e-55 218.4 133 84.2
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.9e-55 218.4 133 84.2
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 8.6e-55 217.2 133 85.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.1e-54 216.9 134 86.6
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.1e-54 216.9 134 86.6
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.9e-54 216.1 133 85.7
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.5e-54 215.7 133 85.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 5.6e-54 214.5 134 85.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 5.6e-54 214.5 134 85.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 5.6e-54 214.5 134 85.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 5.6e-54 214.5 134 85.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 7.3e-54 214.2 133 83.5
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 9.5e-54 213.8 133 84.2
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.6e-53 213.0 134 85.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.1e-53 212.6 133 82.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.1e-53 212.6 134 85.1
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.6e-53 211.8 133 85.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.7e-53 211.5 143 78.3
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 6.1e-53 211.1 134 84.3
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 6.1e-53 211.1 134 84.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.0e-52 210.3 133 83.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.2e-52 208.0 133 80.5
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.2e-52 208.0 133 79.7
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 5.8e-51 204.5 134 82.1
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.8e-48 194.1 133 81.2
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.3e-47 192.6 133 72.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 8.6e-47 190.7 101 97.0
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 4.3e-46 188.3 133 75.9
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.7e-45 184.9 100 93.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.1e-44 183.7 133 78.9
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-44 183.7 101 92.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.3e-44 182.6 133 75.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.1e-44 182.2 100 91.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 7.5e-43 177.6 101 90.1
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.7e-42 175.3 133 72.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.4e-41 172.6 101 85.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.4e-41 171.4 101 85.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.7e-39 166.4 132 63.6
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 6.6e-39 164.5 133 62.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.6e-38 161.4 119 72.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-37 159.8 133 71.4
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 8.9e-36 154.1 130 56.9
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.2e-32 143.7 127 58.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 7.8e-32 141.0 128 54.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 7.8e-32 141.0 78 92.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.3e-31 140.2 132 56.8
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.3e-31 139.4 119 64.7
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.9e-31 138.7 133 63.2
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 5.1e-31 138.3 78 91.0
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.9e-30 136.3 131 55.0
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.2e-28 128.3 76 86.8
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-27 126.7 77 84.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 3.4e-27 125.6 86 77.9
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.2e-26 122.9 136 51.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.4e-26 120.9 119 47.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-25 120.6 86 72.1
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 3.0e-23 112.5 124 44.4
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 7.3e-22 107.8 57 94.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 3.2e-17 92.4 129 36.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 4.3e-14 82.0 76 59.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.8e-12 76.6 42 90.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 2.6e-11 72.8 41 87.8
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.9e-09 66.6 58 65.5
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-09 66.6 73 57.5
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 4.2e-09 65.5 72 56.9
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.2e-08 63.9 37 78.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.6e-08 63.5 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 7.9e-08 61.2 58 63.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.8e-07 60.1 38 71.1
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 6.7e-07 58.2 38 78.9


User provided reference genes

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