Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.8e-99 365.9 184 100.0
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 9.5e-77 290.4 186 80.1
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.5e-74 283.1 186 81.7
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 3.7e-73 278.5 162 85.8
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 9.6e-69 263.8 164 84.1
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 8.4e-65 250.8 182 74.7
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.4e-64 250.0 188 73.9
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 1.4e-64 250.0 182 72.0
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.3e-62 242.7 184 71.7
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 2.4e-59 232.6 185 67.6
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 3.1e-59 232.3 183 66.7
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 6.9e-59 231.1 190 64.2
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.4e-58 228.4 190 64.2
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 4.4e-58 228.4 197 61.9
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 5.8e-58 228.0 190 62.6
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 7.6e-58 227.6 186 66.1
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 9.9e-58 227.3 198 62.6
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.9e-57 225.7 186 63.4
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.4e-56 223.4 186 62.9
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 2.4e-56 222.6 195 61.5
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.2e-56 222.2 189 66.1
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 3.2e-56 222.2 176 64.8
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 3.2e-56 222.2 188 61.7
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 5.4e-56 221.5 194 60.8
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 5.4e-56 221.5 192 60.9
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 7.1e-56 221.1 162 74.1
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 7.1e-56 221.1 187 61.0
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 9.3e-56 220.7 185 61.6
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 2.7e-55 219.2 193 60.6
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.7e-55 219.2 160 68.8
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 6.0e-55 218.0 170 64.1
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 1.0e-54 217.2 185 61.1
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.7e-54 216.5 191 61.8
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 3.9e-54 215.3 186 61.8
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 8.7e-54 214.2 185 60.0
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 2.5e-53 212.6 186 65.1
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.3e-52 210.3 179 63.7
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 2.1e-52 209.5 186 60.2
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.8e-52 209.1 189 61.4
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.8e-52 209.1 189 61.4
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 1.4e-51 206.8 186 55.4
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.9e-51 204.5 184 58.7
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.2e-50 203.8 193 58.0
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 2.6e-50 202.6 191 58.6
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 3.4e-50 202.2 196 57.1
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.3e-49 200.3 223 52.9
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 2.4e-48 196.1 152 68.4
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 7.1e-48 194.5 197 52.8
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 3.5e-47 192.2 182 54.9
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 4.6e-47 191.8 151 66.2
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 6.0e-47 191.4 193 54.9
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 7.9e-47 191.0 200 55.0
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 1.8e-46 189.9 228 48.7
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 6.7e-46 188.0 154 57.8
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 3.3e-45 185.7 162 56.2
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 5.6e-45 184.9 182 56.6
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 5.6e-45 184.9 155 62.6
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 7.4e-45 184.5 178 59.6
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.6e-44 183.3 171 57.9
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 3.7e-44 182.2 144 64.6
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 6.2e-44 181.4 140 61.4
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 1.4e-43 180.3 195 49.7
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 9.0e-43 177.6 179 54.2
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 2.0e-42 176.4 195 56.9
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 3.4e-42 175.6 188 55.9
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 4.5e-42 175.3 199 54.3
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 5.8e-42 174.9 179 53.6
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 7.6e-42 174.5 158 58.2
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.0e-41 174.1 220 49.1
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 2.9e-41 172.6 153 60.1
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 4.9e-41 171.8 180 55.0
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 3.2e-40 169.1 179 48.6
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 5.5e-40 168.3 198 51.5
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 7.1e-40 167.9 144 56.9
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 7.1e-40 167.9 192 52.6
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 7.1e-40 167.9 192 52.1
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 7.1e-40 167.9 187 56.7
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 9.3e-40 167.5 198 52.0
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 9.3e-40 167.5 193 52.3
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 1.6e-39 166.8 179 46.9
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 2.1e-39 166.4 189 52.9
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 2.1e-39 166.4 189 52.9
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.8e-38 163.3 188 52.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 2.5e-37 159.5 192 49.5
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 6.2e-36 154.8 109 69.7
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 3.1e-35 152.5 183 48.1
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 5.8e-34 148.3 132 59.8
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.0e-33 147.5 108 69.4
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 4.2e-32 142.1 137 61.3
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 1.3e-30 137.1 167 44.3
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 5.0e-25 118.6 87 66.7
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 8.5e-25 117.9 100 62.0
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 3.9e-22 109.0 72 76.4
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.5e-21 106.3 85 64.7
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 3.3e-21 105.9 149 43.6
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 3.3e-21 105.9 76 68.4
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 4.3e-21 105.5 89 62.9
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 8.2e-20 101.3 111 50.5
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 8.2e-20 101.3 106 53.8
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.1e-19 100.9 89 59.6
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 1.4e-19 100.5 67 73.1
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 2.6e-18 96.3 104 53.8
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 2.6e-18 96.3 104 53.8
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 7.7e-18 94.7 106 51.9
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 2.9e-17 92.8 107 36.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 5.0e-17 92.0 70 62.9
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 2.5e-16 89.7 105 37.1
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 1.2e-15 87.4 180 35.6
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 1.6e-15 87.0 108 37.0
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 4.7e-15 85.5 65 60.0
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 4.7e-15 85.5 65 60.0
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 6.1e-15 85.1 53 71.7
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 4.4e-13 79.0 75 52.0
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 6.3e-12 75.1 51 62.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 1.4e-11 73.9 116 31.0
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-11 73.9 52 73.1
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 2.4e-11 73.2 51 72.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 3.1e-11 72.8 52 71.2
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 5.2e-06 55.5 50 58.0
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 6.7e-06 55.1 112 31.2
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 6.7e-06 55.1 115 29.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 8.8e-06 54.7 112 31.2


User provided reference genes

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