Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 3.8e-45 184.5 95 100.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.4e-41 171.0 95 94.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.2e-25 119.8 98 69.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 4.4e-25 117.9 95 72.6
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 7.7e-22 107.1 94 69.1
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.1e-20 103.2 94 62.8
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.5e-20 102.8 91 61.5
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.2e-20 101.7 104 55.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 8.8e-18 93.6 106 55.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.5e-12 76.3 89 53.9
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.2e-12 75.1 89 50.6
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 3.2e-12 75.1 94 46.8
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 4.2e-12 74.7 100 50.0
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 5.5e-12 74.3 89 49.4
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.2e-12 73.9 77 49.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 7.2e-12 73.9 77 49.4
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 9.5e-12 73.6 125 42.4
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 9.5e-12 73.6 96 51.0
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.2e-11 73.2 105 47.6
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.2e-11 73.2 99 44.4
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.8e-11 72.0 86 52.3
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.8e-11 72.0 90 48.9
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 3.6e-11 71.6 87 50.6
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.7e-11 71.2 89 50.6
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 6.1e-11 70.9 83 48.2
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.0e-10 70.1 121 41.3
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.0e-10 70.1 100 43.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.0e-10 70.1 77 50.6
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 1.4e-10 69.7 84 50.0
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.4e-10 69.7 99 42.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.8e-10 69.3 89 47.2
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.8e-10 69.3 82 52.4
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.8e-10 69.3 96 46.9
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.0e-10 68.6 99 42.4
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.0e-10 68.6 99 42.4
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 3.0e-10 68.6 84 45.2
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 4.0e-10 68.2 77 49.4
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 4.0e-10 68.2 105 43.8
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 5.2e-10 67.8 81 46.9
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 5.2e-10 67.8 96 49.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 6.8e-10 67.4 108 39.8
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.8e-10 67.0 97 43.3
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 2.0e-09 65.9 103 40.8
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 2.0e-09 65.9 85 43.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.0e-09 65.9 100 45.0
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 2.6e-09 65.5 92 44.6
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 2.6e-09 65.5 103 39.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.6e-09 65.5 77 49.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.4e-09 65.1 84 41.7
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 3.4e-09 65.1 124 34.7
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.4e-09 64.7 77 48.1
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 7.5e-09 63.9 101 43.6
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 7.5e-09 63.9 92 44.6
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 9.8e-09 63.5 110 41.8
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 9.8e-09 63.5 110 41.8
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 9.8e-09 63.5 110 41.8
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 9.8e-09 63.5 78 46.2
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 89 43.8
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-08 63.2 89 43.8
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.3e-08 63.2 121 34.7
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.3e-08 63.2 121 35.5
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 89 42.7
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 1.7e-08 62.8 89 42.7
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.7e-08 62.8 121 34.7
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.7e-08 62.8 93 43.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.2e-08 62.4 85 50.6
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 2.2e-08 62.4 89 42.7
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-08 62.0 106 40.6
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 2.8e-08 62.0 106 40.6
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.8e-08 62.0 106 40.6
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 2.8e-08 62.0 106 40.6
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 2.8e-08 62.0 96 46.9
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.8e-08 62.0 95 40.0
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 3.7e-08 61.6 98 41.8
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.7e-08 61.6 97 40.2
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.7e-08 61.6 107 35.5
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.3e-08 60.8 47 66.0
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 6.3e-08 60.8 123 36.6
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.3e-08 60.5 110 40.0
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 8.3e-08 60.5 120 36.7
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.3e-08 60.5 90 43.3
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 90 43.3
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-07 60.1 88 43.2
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.1e-07 60.1 95 38.9
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.4e-07 59.7 94 38.3
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.4e-07 59.7 104 42.3
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.8e-07 59.3 104 36.5
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.8e-07 59.3 78 47.4
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-07 58.9 97 41.2
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 2.4e-07 58.9 90 42.2
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 3.1e-07 58.5 90 42.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.1e-07 58.5 99 40.4
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 3.1e-07 58.5 100 40.0
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.1e-07 58.5 99 40.4
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.1e-07 58.5 109 39.4
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.1e-07 58.5 90 40.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.1e-07 58.2 110 37.3
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 4.1e-07 58.2 95 37.9
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 5.4e-07 57.8 90 43.3
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 5.4e-07 57.8 87 41.4
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 7.0e-07 57.4 87 40.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 9.2e-07 57.0 111 34.2
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 9.2e-07 57.0 99 39.4
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 9.2e-07 57.0 104 37.5
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 9.2e-07 57.0 91 40.7
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 9.2e-07 57.0 91 40.7
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 9.2e-07 57.0 100 42.0
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.2e-06 56.6 90 41.1
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.2e-06 56.6 131 33.6
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.2e-06 56.6 105 37.1
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.2e-06 56.6 37 78.4
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 104 36.5
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.6e-06 56.2 104 36.5
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.6e-06 56.2 117 35.0
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 87 36.8
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.6e-06 56.2 111 34.2
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.0e-06 55.8 92 41.3
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.7e-06 55.5 96 40.6
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.5e-06 55.1 90 40.0
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.5e-06 55.1 84 44.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.5e-06 55.1 57 52.6
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.5e-06 54.7 106 37.7
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.5e-06 54.7 106 37.7
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 4.5e-06 54.7 36 75.0
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 4.5e-06 54.7 104 35.6
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 5.9e-06 54.3 108 40.7
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 5.9e-06 54.3 91 39.6


User provided reference genes

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