Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 6.8e-92 342.4 590 100.0
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 2.4e-41 174.5 177 57.6
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 1.8e-36 158.3 594 86.5
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 9.9e-35 152.5 134 62.7
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 4.2e-33 147.1 131 60.3
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.7e-32 144.4 137 56.9
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.5e-30 138.7 173 61.3
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.3e-26 125.6 139 52.5
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.7e-26 125.2 138 50.7
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.5e-22 111.3 176 39.2
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 2.8e-21 107.8 140 47.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 6.3e-21 106.7 175 53.1
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 1.1e-20 105.9 176 50.0
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.4e-20 105.5 148 43.9
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.4e-20 105.5 172 51.7
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.8e-20 105.1 173 41.0
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 2.4e-20 104.8 176 38.6
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 5.3e-20 103.6 137 45.3
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 5.3e-20 103.6 174 35.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-19 101.7 172 50.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-19 101.7 172 50.0
Glyma.19G248500 Glycine max HOM05D007620 ORTHO05D009568 2.0e-19 101.7 101 48.5
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.6e-19 101.3 176 51.1
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 3.4e-19 100.9 172 36.6
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 3.4e-19 100.9 113 43.4
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.4e-19 100.9 177 50.8
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 5.9e-19 100.1 176 35.8
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 5.9e-19 100.1 176 35.8
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 7.7e-19 99.8 172 49.4
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 7.7e-19 99.8 134 41.8
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.0e-18 99.4 178 51.7
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.2e-18 98.2 172 48.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.2e-18 98.2 172 37.8
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 2.9e-18 97.8 176 33.0
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 5.0e-18 97.1 137 40.9
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 6.5e-18 96.7 76 59.2
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.4e-17 95.5 175 36.6
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.4e-17 95.5 172 36.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.4e-17 95.5 139 43.9
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.4e-17 95.5 171 39.8
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 1.9e-17 95.1 138 41.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.9e-17 95.1 135 43.0
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.9e-17 95.1 177 48.0
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.2e-16 92.4 115 64.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.1e-16 91.7 67 62.7
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.6e-16 90.9 146 42.5
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 4.6e-16 90.5 142 41.5
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 6.1e-16 90.1 97 46.4
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 6.1e-16 90.1 112 41.1
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 6.1e-16 90.1 116 65.5
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.4e-15 89.0 139 39.6
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.8e-15 88.6 60 63.3
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.8e-15 88.6 116 42.2
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.3e-15 88.2 141 39.0
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 6.7e-15 86.7 132 56.1
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 8.8e-15 86.3 72 54.2
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.3e-14 84.3 137 40.1
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 4.3e-14 84.0 115 40.0
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 5.7e-14 83.6 185 34.6
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 9.7e-14 82.8 60 65.0
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.7e-13 82.0 146 39.0
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.7e-13 82.0 146 39.0
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.7e-13 82.0 105 38.1
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.7e-13 82.0 138 40.6
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.8e-13 81.3 138 39.1
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 3.7e-13 80.9 59 61.0
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 6.3e-13 80.1 76 48.7
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 6.3e-13 80.1 138 39.9
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 8.2e-13 79.7 139 38.8
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 8.2e-13 79.7 187 31.6
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 1.1e-12 79.3 66 53.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.4e-12 79.0 180 32.2
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 1.4e-12 79.0 68 55.9
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.8e-12 78.6 153 49.7
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.1e-12 77.8 51 68.6
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 3.1e-12 77.8 130 56.2
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 6.9e-12 76.6 64 54.7
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 1.2e-11 75.9 120 36.7
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 2.0e-11 75.1 101 63.4
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 3.4e-11 74.3 77 46.8
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 3.4e-11 74.3 93 39.8
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 3.4e-11 74.3 50 72.0
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 4.5e-11 73.9 93 39.8
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 4.5e-11 73.9 78 47.4
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 7.7e-11 73.2 101 36.6
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 7.7e-11 73.2 101 36.6
Lj2C43T6 Lonicera japonica HOM05D017878 ORTHO05D018225 2.2e-10 71.6 55 54.5
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.9e-10 71.2 181 40.3
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.1e-09 69.3 174 32.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 2.5e-09 68.2 147 32.7
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 5.5e-09 67.0 145 32.4
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.6e-08 65.5 75 44.0
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 3.0e-07 61.2 44 59.1
HPP92_005406 Vanilla planifolia HOM05D006918 ORTHO05D008525 3.3e-06 57.8 67 37.3


User provided reference genes

Program Settings