Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22287 Trifolium pratense HOM05D003095 ORTHO05D003517 3.4e-46 188.0 95 100.0
Psat2g159640 Pisum sativum HOM05D003095 ORTHO05D003517 2.0e-30 135.6 79 84.8
Lj2g0002055 Lotus japonicus HOM05D003095 ORTHO05D003517 2.5e-28 128.6 95 70.5
VMungo1215G1137 Vigna mungo HOM05D000049 ORTHO05D000027 8.0e-27 123.6 95 68.4
Glyma.01G176200 Glycine max HOM05D003095 ORTHO05D003517 1.4e-26 122.9 95 70.5
Phvul.002G030500 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 1.8e-23 112.5 97 67.0
Glyma.11G068401 Glycine max HOM05D003095 ORTHO05D003517 5.3e-23 110.9 79 69.6
Medtr5g020180 Medicago truncatula HOM05D003095 ORTHO05D003517 1.7e-21 105.9 63 79.4
Lalb_Chr16g0377821 Lupinus albus HOM05D003095 ORTHO05D003517 3.7e-16 88.2 76 60.5
arahy.Tifrunner.gnm1.ann1.LUC5KR Arachis hypogaea HOM05D003095 ORTHO05D003517 4.5e-14 81.3 61 62.3
CDE01G0538 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 7.2e-12 73.9 66 53.0
SEGI_39866 Sequoiadendron giganteum HOM05D003095 ORTHO05D003517 1.8e-10 69.3 82 43.9
arahy.Tifrunner.gnm1.ann1.JCZ0SG Arachis hypogaea HOM05D003095 ORTHO05D003517 1.5e-09 66.2 45 64.4
Os08g0204632 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 1.5e-09 66.2 91 38.5
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 2.0e-09 65.9 89 41.6
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 2.6e-09 65.5 83 42.2
Os03g0724500 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 4.4e-09 64.7 69 44.9
Prupe.7G155100 Prunus persica HOM05D003095 ORTHO05D003517 7.5e-09 63.9 77 42.9
Prupe.8G064900 Prunus persica HOM05D003095 ORTHO05D003517 1.7e-08 62.8 83 39.8
Atru.chr5.3024 Acer truncatum HOM05D003095 ORTHO05D003517 2.8e-08 62.0 78 38.5
MD15G1261200 Malus domestica HOM05D003095 ORTHO05D003517 3.7e-08 61.6 71 46.5
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 4.9e-08 61.2 63 50.8
Manes.17G101700 Manihot esculenta HOM05D003095 ORTHO05D003517 4.9e-08 61.2 82 40.2
Lsat_1_v5_gn_5_117800 Lactuca sativa HOM05D003095 ORTHO05D003517 6.3e-08 60.8 74 41.9
Nn5g29621 Nelumbo nucifera HOM05D003095 ORTHO05D003517 6.3e-08 60.8 77 44.2
Os10g0557800 Oryza sativa ssp. japonica HOM05D003095 ORTHO05D003517 6.3e-08 60.8 77 44.2
Dinv23514 Davidia involucrata HOM05D003095 ORTHO05D003517 8.3e-08 60.5 68 42.6
Duzib264G0230 Durio zibethinus HOM05D003095 ORTHO05D003517 8.3e-08 60.5 67 43.3
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 1.1e-07 60.1 83 37.3
CANSAT56G0597 Cannabis sativa HOM05D003095 ORTHO05D003517 1.1e-07 60.1 93 41.9
AUR62011312 Chenopodium quinoa HOM05D003095 ORTHO05D003517 1.1e-07 60.1 83 37.3
Lalb_Chr19g0128111 Lupinus albus HOM05D003095 ORTHO05D003517 1.1e-07 60.1 88 37.5
Lalb_Chr19g0128121 Lupinus albus HOM05D003095 ORTHO05D003517 1.1e-07 60.1 76 42.1
MD02G1147100 Malus domestica HOM05D003095 ORTHO05D003517 1.4e-07 59.7 71 46.5
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 1.4e-07 59.7 60 43.3
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 1.4e-07 59.7 67 43.3
vmacro17487 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 1.4e-07 59.7 74 41.9
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 1.8e-07 59.3 96 36.5
Lj4g0025197 Lotus japonicus HOM05D003095 ORTHO05D003517 1.8e-07 59.3 69 44.9
Dinv42060 Davidia involucrata HOM05D003095 ORTHO05D003517 2.4e-07 58.9 87 39.1
Hma1.2p1_0098F.1_g048145 Hydrangea macrophylla HOM05D003095 ORTHO05D003517 2.4e-07 58.9 83 39.8
TAR381G1321 Trochodendron aralioides HOM05D003095 ORTHO05D003517 2.4e-07 58.9 71 38.0
ATR0564G142 Amborella trichopoda HOM05D003095 ORTHO05D003517 3.1e-07 58.5 76 39.5
EL10Ac2g03674 Beta vulgaris HOM05D003095 ORTHO05D003517 3.1e-07 58.5 95 33.7
CAN.G1412.13 Capsicum annuum HOM05D003095 ORTHO05D003517 3.1e-07 58.5 88 37.5
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 3.1e-07 58.5 84 38.1
Oeu055595.1 Olea europaea HOM05D003095 ORTHO05D003517 3.1e-07 58.5 80 40.0
Phvul.007G250700 Phaseolus vulgaris HOM05D003095 ORTHO05D003517 3.1e-07 58.5 72 40.3
Hund06238 Selenicereus undatus HOM05D003095 ORTHO05D003517 3.1e-07 58.5 83 37.3
Zm00001eb055770 Zea mays HOM05D003095 ORTHO05D003517 3.1e-07 58.5 92 34.8
PGR042G0984 Punica granatum HOM05D003095 ORTHO05D003517 4.1e-07 58.2 64 40.6
SalBow6G1740 Salvia bowleyana HOM05D003095 ORTHO05D003517 4.1e-07 58.2 77 37.7
Solyc01g109680.3 Solanum lycopersicum HOM05D003095 ORTHO05D003517 4.1e-07 58.2 74 39.2
Sopen01g051870 Solanum pennellii HOM05D003095 ORTHO05D003517 4.1e-07 58.2 74 39.2
PGSC0003DMG400000729 Solanum tuberosum HOM05D003095 ORTHO05D003517 4.1e-07 58.2 74 39.2
MBI05_g05282_MAGBIO Magnolia biondii HOM05D003095 ORTHO05D003517 5.4e-07 57.8 87 35.6
MD05G1065400 Malus domestica HOM05D003095 ORTHO05D003517 5.4e-07 57.8 88 34.1
Nitab4.5_0011729g0020 Nicotiana tabacum HOM05D003095 ORTHO05D003517 5.4e-07 57.8 74 37.8
Peaxi162Scf00016g00073 Petunia axillaris HOM05D003095 ORTHO05D003517 5.4e-07 57.8 68 39.7
Prupe.8G096200 Prunus persica HOM05D003095 ORTHO05D003517 5.4e-07 57.8 90 37.8
TWI31G0443 Tripterygium wilfordii HOM05D003095 ORTHO05D003517 5.4e-07 57.8 72 38.9
Migut.N02616 Erythranthe guttata HOM05D003095 ORTHO05D003517 7.0e-07 57.4 72 38.9
FAN23G2538 Fragaria x ananassa HOM05D003095 ORTHO05D003517 7.0e-07 57.4 72 47.2
Gohir.A13G009200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 7.0e-07 57.4 70 37.1
Medtr3g013450 Medicago truncatula HOM05D003095 ORTHO05D003517 7.0e-07 57.4 88 38.6
PGR119G1136 Punica granatum HOM05D003095 ORTHO05D003517 7.0e-07 57.4 63 39.7
Rhsim11G0048900 Rhododendron simsii HOM05D003095 ORTHO05D003517 7.0e-07 57.4 82 35.4
SalBow3G4023 Salvia bowleyana HOM05D003095 ORTHO05D003517 7.0e-07 57.4 62 41.9
Zm00001eb016400 Zea mays HOM05D003095 ORTHO05D003517 7.0e-07 57.4 89 37.1
Ciclev10029652m.g Citrus clementina HOM05D003095 ORTHO05D003517 9.2e-07 57.0 82 34.1
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 9.2e-07 57.0 76 39.5
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 9.2e-07 57.0 79 38.0
Nitab4.5_0003811g0120 Nicotiana tabacum HOM05D003095 ORTHO05D003517 9.2e-07 57.0 74 40.5
Eucgr.I01274 Eucalyptus grandis HOM05D003095 ORTHO05D003517 1.2e-06 56.6 60 41.7
LjContig00049g0022514 Lotus japonicus HOM05D003095 ORTHO05D003517 1.2e-06 56.6 69 43.5
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 1.2e-06 56.6 67 40.3
Sabra02G0046500 Salix brachista HOM05D003095 ORTHO05D003517 1.2e-06 56.6 77 42.9
Sc20g0006190 Simmondsia chinensis HOM05D003095 ORTHO05D003517 1.2e-06 56.6 70 37.1
AUR62020660 Chenopodium quinoa HOM05D003095 ORTHO05D003517 1.6e-06 56.2 80 32.5
Gohir.A13G067200 Gossypium hirsutum HOM05D003095 ORTHO05D003517 1.6e-06 56.2 75 40.0
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 2.0e-06 55.8 96 34.4
arahy.Tifrunner.gnm1.ann1.RU14FQ Arachis hypogaea HOM05D003095 ORTHO05D003517 2.0e-06 55.8 72 38.9
FvH4_4g27401 Fragaria vesca HOM05D003095 ORTHO05D003517 2.0e-06 55.8 96 36.5
Gohir.D13G009900 Gossypium hirsutum HOM05D003095 ORTHO05D003517 2.0e-06 55.8 70 37.1
Nitab4.5_0002503g0080 Nicotiana tabacum HOM05D003095 ORTHO05D003517 2.0e-06 55.8 60 43.3
Oeu061208.1 Olea europaea HOM05D003095 ORTHO05D003517 2.0e-06 55.8 80 37.5
Potri.002G057100 Populus trichocarpa HOM05D003095 ORTHO05D003517 2.0e-06 55.8 70 42.9
unitig_699.g19197 Utricularia gibba HOM05D003095 ORTHO05D003517 2.0e-06 55.8 59 40.7
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 2.7e-06 55.5 63 39.7
arahy.Tifrunner.gnm1.ann1.7U3W9V Arachis hypogaea HOM05D003095 ORTHO05D003517 2.7e-06 55.5 89 34.8
Medtr1g052680 Medicago truncatula HOM05D003095 ORTHO05D003517 2.7e-06 55.5 96 37.5
Oeu055590.1 Olea europaea HOM05D003095 ORTHO05D003517 2.7e-06 55.5 70 37.1
Potri.004G155500 Populus trichocarpa HOM05D003095 ORTHO05D003517 2.7e-06 55.5 68 41.2
QL01p053044 Quercus lobata HOM05D003095 ORTHO05D003517 2.7e-06 55.5 82 36.6
QL01p053074 Quercus lobata HOM05D003095 ORTHO05D003517 2.7e-06 55.5 82 36.6
QL10p007071 Quercus lobata HOM05D003095 ORTHO05D003517 2.7e-06 55.5 82 36.6
QL11p043988 Quercus lobata HOM05D003095 ORTHO05D003517 2.7e-06 55.5 82 36.6
Actinidia24323 Actinidia chinensis HOM05D003095 ORTHO05D003517 3.5e-06 55.1 73 41.1
Glyma.04G132300 Glycine max HOM05D003095 ORTHO05D003517 3.5e-06 55.1 92 35.9
Gorai.013G010600 Gossypium raimondii HOM05D003095 ORTHO05D003517 3.5e-06 55.1 71 38.0
RcHm_v2.0_Chr2g0101511 Rosa chinensis HOM05D003095 ORTHO05D003517 3.5e-06 55.1 73 46.6
GSVIVG01031976001 Vitis vinifera HOM05D003095 ORTHO05D003517 3.5e-06 55.1 92 37.0
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 4.5e-06 54.7 75 37.3
CSS0000040 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 4.5e-06 54.7 68 38.2
CSS0048455 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 4.5e-06 54.7 68 38.2
CDE09G0501 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 55 49.1
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 4.5e-06 54.7 70 41.4
Cc02_g17490 Coffea canephora HOM05D003095 ORTHO05D003517 4.5e-06 54.7 93 36.6
ECA234G3955 Erigeron canadensis HOM05D003095 ORTHO05D003517 4.5e-06 54.7 72 37.5
FvH4_1g13270 Fragaria vesca HOM05D003095 ORTHO05D003517 4.5e-06 54.7 72 45.8
PSO676G0010 Papaver somniferum HOM05D003095 ORTHO05D003517 4.5e-06 54.7 69 46.4
Sabra04G0103300 Salix brachista HOM05D003095 ORTHO05D003517 4.5e-06 54.7 68 39.7
HPP92_014011 Vanilla planifolia HOM05D003095 ORTHO05D003517 4.5e-06 54.7 48 50.0
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 5.9e-06 54.3 54 51.9
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 5.9e-06 54.3 54 51.9
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 5.9e-06 54.3 54 51.9
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 5.9e-06 54.3 54 51.9
Cpa.g.sc62.158 Carica papaya HOM05D003095 ORTHO05D003517 5.9e-06 54.3 88 34.1
FAN19G1926 Fragaria x ananassa HOM05D003095 ORTHO05D003517 5.9e-06 54.3 72 45.8
FAN26G1671 Fragaria x ananassa HOM05D003095 ORTHO05D003517 5.9e-06 54.3 72 45.8
Gohir.D13G054400 Gossypium hirsutum HOM05D003095 ORTHO05D003517 5.9e-06 54.3 62 43.5
Gorai.013G061200 Gossypium raimondii HOM05D003095 ORTHO05D003517 5.9e-06 54.3 62 43.5
RcHm_v2.0_Chr4g0435221 Rosa chinensis HOM05D003095 ORTHO05D003517 5.9e-06 54.3 93 35.5
Zm00001eb023290 Zea mays HOM05D003095 ORTHO05D003517 5.9e-06 54.3 57 49.1
CAN.G199.70 Capsicum annuum HOM05D003095 ORTHO05D003517 7.8e-06 53.9 60 41.7
CDE01G0165 Ceratophyllum demersum HOM05D003095 ORTHO05D003517 7.8e-06 53.9 81 33.3
Peaxi162Scf00430g00215 Petunia axillaris HOM05D003095 ORTHO05D003517 7.8e-06 53.9 70 38.6
vmacro00179 Vaccinium macrocarpon HOM05D003095 ORTHO05D003517 7.8e-06 53.9 60 41.7


User provided reference genes

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