Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 0.0e+00 2113.2 1182 100.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 0.0e+00 1532.3 1333 68.8
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 0.0e+00 1456.4 1149 76.1
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 0.0e+00 1078.9 854 76.2
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 9.0e-253 877.9 1178 49.3
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 9.9e-252 874.4 1178 50.8
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.3e-215 753.1 1135 46.3
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.3e-214 751.1 1174 47.5
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.4e-213 746.9 1031 47.7
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 8.0e-209 731.9 1153 48.3
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.3e-206 724.5 1177 44.9
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 6.7e-200 702.2 1178 44.0
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 5.2e-160 569.7 1098 38.1
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 5.1e-155 553.1 1214 37.1
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 8.1e-153 545.8 1217 36.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 9.9e-143 512.3 1227 37.2
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 6.0e-140 503.1 1142 35.9
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.9e-139 500.4 1097 36.6
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.1e-136 492.3 1243 33.6
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.7e-134 485.0 1122 35.5
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.8e-129 467.6 1004 36.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.8e-129 467.6 1155 34.6
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.9e-128 463.0 1149 33.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 6.9e-128 463.0 1119 34.0
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.2e-125 454.1 1265 32.4
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 9.3e-125 452.6 1122 34.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 3.0e-123 447.6 1142 33.9
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.9e-118 431.0 1123 33.1
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.9e-118 431.0 1249 32.7
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.4e-118 429.5 1207 32.3
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.5e-117 427.9 1251 32.5
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.1e-116 424.9 1245 32.0
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 7.9e-116 422.9 1054 33.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.1e-112 412.5 921 36.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.1e-112 412.5 1220 31.7
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 4.1e-112 410.6 1204 32.9
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.3e-112 410.2 1010 34.4
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.5e-111 408.7 1010 34.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.0e-111 408.3 1185 31.4
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 7.7e-111 406.4 1015 33.9
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-110 406.0 1010 34.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.5e-109 400.2 1139 32.1
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.6e-108 397.5 846 36.4
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 6.7e-107 393.3 1137 31.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 9.7e-106 389.4 820 36.7
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.4e-104 385.6 1139 31.9
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.0e-103 381.7 1056 32.8
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 2.2e-102 378.3 1193 31.3
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 2.2e-102 378.3 1134 31.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.9e-101 375.2 1214 29.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 7.2e-101 373.2 1042 32.6
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 5.3e-96 357.1 1168 29.9
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.5e-95 355.5 721 36.9
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.5e-95 355.5 1099 31.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.9e-94 351.3 1251 29.0
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.2e-92 345.9 816 33.8
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.5e-90 339.0 869 33.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 7.4e-90 336.7 1014 31.0
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 3.1e-88 331.3 1122 29.9
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.1e-88 330.9 1075 30.7
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 2.6e-87 328.2 1096 29.7
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 7.7e-87 326.6 1102 30.1
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.5e-86 323.6 1016 30.8
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 6.1e-84 317.0 1141 28.7
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.2e-81 308.5 946 30.9
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.6e-79 302.4 1081 27.6
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.0e-79 302.0 1102 28.6
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.5e-79 301.2 898 32.9
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 4.5e-79 300.8 1097 29.0
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 7.7e-79 300.1 1192 28.5
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 5.0e-78 297.4 1179 28.8
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 6.5e-78 297.0 1092 29.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 4.0e-75 287.7 1178 28.3
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.0e-75 287.7 1076 28.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 2.0e-74 285.4 284 56.0
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 9.8e-74 283.1 906 30.9
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 5.9e-71 273.9 292 54.1
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.0e-70 273.1 1070 28.0
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 5.0e-70 270.8 1065 28.4
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 6.6e-70 270.4 1204 26.2
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 6.6e-70 270.4 802 31.8
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-69 269.6 1128 27.2
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-69 269.2 1181 27.3
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.9e-69 268.9 1213 27.0
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.1e-68 265.4 1204 26.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 3.6e-68 264.6 1183 27.1
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 3.6e-68 264.6 1182 26.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.6e-68 264.6 809 31.0
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 4.7e-68 264.2 1081 26.8
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 4.0e-67 261.2 1187 27.0
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.6e-66 258.5 815 31.0
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-65 256.1 1038 28.4
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 3.2e-64 251.5 944 28.6
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 9.2e-64 250.0 1080 27.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.3e-62 246.1 1148 27.2
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.6e-60 239.2 1095 26.8
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.4e-59 236.1 999 28.3
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.8e-59 235.7 961 26.7
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 7.0e-56 223.8 796 29.6
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 4.6e-55 221.1 742 29.5
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.3e-54 218.8 1186 26.0
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.3e-53 213.8 516 33.7
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 6.8e-51 207.2 1109 26.1
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 4.9e-49 201.1 652 27.6
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.2e-47 196.4 1146 24.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.0e-42 179.1 235 45.5
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-40 173.3 432 32.4
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-40 173.3 432 32.4
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.1e-40 173.3 432 32.4
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.1e-40 173.3 807 26.5
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.5e-39 168.3 472 32.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 9.9e-34 150.2 512 27.0
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.3e-28 133.3 186 44.6
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 6.2e-28 131.0 320 30.3
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 4.0e-27 128.3 320 30.3
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.5e-26 126.3 324 30.9
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.0e-26 125.9 615 25.9
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.0e-26 125.9 405 28.4
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 2.2e-25 122.5 158 43.0
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 9.3e-24 117.1 1111 21.2
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 3.0e-22 112.1 505 26.9
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.1e-21 110.2 864 21.9
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 6.2e-20 104.4 151 37.7
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.4e-19 102.4 342 27.5
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 3.4e-18 98.6 89 68.5
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 5.5e-16 91.3 231 32.5
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 9.3e-16 90.5 133 40.6
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.7e-14 84.0 400 25.0
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 1.9e-13 82.8 245 34.3
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.5e-13 82.4 107 46.7
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.3e-11 74.7 226 30.1
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 1.3e-09 70.1 90 42.2
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.1e-08 67.0 286 26.6
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 9.3e-08 63.9 344 25.3
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.1e-06 58.2 412 22.6


User provided reference genes

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