Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22243 Trifolium pratense HOM05D003330 ORTHO05D003805 1.4e-34 149.1 75 100.0
Medtr8g016030 Medicago truncatula HOM05D003330 ORTHO05D003805 3.5e-25 117.9 71 83.1
Psat0s4107g0040 Pisum sativum HOM05D003330 ORTHO05D003805 2.6e-20 101.7 71 77.5
Phvul.010G022900 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 1.6e-14 82.4 73 65.8
Lalb_Chr19g0125901 Lupinus albus HOM05D003330 ORTHO05D003805 4.7e-14 80.9 71 67.6
Psat4g204360 Pisum sativum HOM05D003330 ORTHO05D003805 8.8e-13 76.6 71 60.6
Lalb_Chr03g0041371 Lupinus albus HOM05D003330 ORTHO05D003805 2.6e-12 75.1 71 63.4
Glyma.03G085500 Glycine max HOM05D003330 ORTHO05D003805 3.4e-12 74.7 64 65.6
TPR.G31568 Trifolium pratense HOM05D003330 ORTHO05D003805 7.5e-12 73.6 71 59.2
Medtr8g012570 Medicago truncatula HOM05D003330 ORTHO05D003805 9.7e-12 73.2 71 59.2
Ca_23216_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 1.7e-11 72.4 71 59.2
CSS0011751 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 2.8e-11 71.6 71 53.5
CSS0049579 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 2.8e-11 71.6 71 53.5
Ca_07508_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 6.3e-11 70.5 55 63.6
Lj1g0012576 Lotus japonicus HOM05D003330 ORTHO05D003805 6.3e-11 70.5 51 70.6
vmacro14723 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 6.3e-11 70.5 71 57.7
Lj3g0017252 Lotus japonicus HOM05D003330 ORTHO05D003805 1.1e-10 69.7 72 59.7
Glyma.03G085100 Glycine max HOM05D003330 ORTHO05D003805 1.4e-10 69.3 73 56.2
Rhsim01G0251100 Rhododendron simsii HOM05D003330 ORTHO05D003805 1.8e-10 68.9 71 59.2
Rhsim13G0049900 Rhododendron simsii HOM05D003330 ORTHO05D003805 2.4e-10 68.6 75 53.3
GSVIVG01000333001 Vitis vinifera HOM05D003330 ORTHO05D003805 2.4e-10 68.6 71 59.2
Dinv28843 Davidia involucrata HOM05D003330 ORTHO05D003805 3.1e-10 68.2 74 54.1
VMungo0331G0963 Vigna mungo HOM05D003330 ORTHO05D003805 3.1e-10 68.2 70 58.6
CSS0043597 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 4.1e-10 67.8 76 55.3
Glyma.16G089300 Glycine max HOM05D003330 ORTHO05D003805 4.1e-10 67.8 70 55.7
Potri.002G247100 Populus trichocarpa HOM05D003330 ORTHO05D003805 4.1e-10 67.8 72 51.4
THA.LOC104822486 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 4.1e-10 67.8 73 56.2
arahy.Tifrunner.gnm1.ann1.K4VXRT Arachis hypogaea HOM05D003330 ORTHO05D003805 5.3e-10 67.4 73 56.2
arahy.Tifrunner.gnm1.ann1.T9C3HB Arachis hypogaea HOM05D003330 ORTHO05D003805 5.3e-10 67.4 73 56.2
Cc01_g16540 Coffea canephora HOM05D003330 ORTHO05D003805 5.3e-10 67.4 74 52.7
Gohir.D07G205000 Gossypium hirsutum HOM05D003330 ORTHO05D003805 5.3e-10 67.4 71 56.3
Gorai.001G231000 Gossypium raimondii HOM05D003330 ORTHO05D003805 5.3e-10 67.4 71 56.3
Sc17g0002010 Simmondsia chinensis HOM05D003330 ORTHO05D003805 5.3e-10 67.4 71 53.5
Dinv14525 Davidia involucrata HOM05D003330 ORTHO05D003805 7.0e-10 67.0 74 55.4
Nitab4.5_0002671g0010 Nicotiana tabacum HOM05D003330 ORTHO05D003805 7.0e-10 67.0 72 52.8
Ciclev10020030m.g Citrus clementina HOM05D003330 ORTHO05D003805 9.1e-10 66.6 73 56.2
Eucgr.H00758 Eucalyptus grandis HOM05D003330 ORTHO05D003805 9.1e-10 66.6 72 52.8
Hma1.2p1_0149F.1_g066530 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 1.2e-09 66.2 71 57.7
Lsat_1_v5_gn_5_177621 Lactuca sativa HOM05D003330 ORTHO05D003805 1.2e-09 66.2 71 54.9
MD05G1169300 Malus domestica HOM05D003330 ORTHO05D003805 1.2e-09 66.2 73 56.2
MD10G1157600 Malus domestica HOM05D003330 ORTHO05D003805 1.2e-09 66.2 73 56.2
COL.COLO4_16110 Corchorus olitorius HOM05D003330 ORTHO05D003805 1.6e-09 65.9 73 54.8
Dinv19152 Davidia involucrata HOM05D003330 ORTHO05D003805 1.6e-09 65.9 74 52.7
Thhalv10004230m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 1.6e-09 65.9 72 52.8
Actinidia09460 Actinidia chinensis HOM05D003330 ORTHO05D003805 2.0e-09 65.5 74 54.1
arahy.Tifrunner.gnm1.ann1.VPSC2F Arachis hypogaea HOM05D003330 ORTHO05D003805 2.0e-09 65.5 42 76.2
Cpa.g.sc8.124 Carica papaya HOM05D003330 ORTHO05D003805 2.0e-09 65.5 75 54.7
Gohir.A07G198600 Gossypium hirsutum HOM05D003330 ORTHO05D003805 2.0e-09 65.5 71 54.9
Hma1.2p1_0226F.1_g095240 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 2.0e-09 65.5 74 56.8
PSO063G6993 Papaver somniferum HOM05D003330 ORTHO05D003805 2.0e-09 65.5 72 54.2
Psat3g149760 Pisum sativum HOM05D003330 ORTHO05D003805 2.0e-09 65.5 60 61.7
vmacro02791 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 2.0e-09 65.5 74 52.7
arahy.Tifrunner.gnm1.ann1.HTR3J4 Arachis hypogaea HOM05D003330 ORTHO05D003805 2.7e-09 65.1 40 80.0
Cfa010402 Carpinus fangiana HOM05D003330 ORTHO05D003805 2.7e-09 65.1 73 53.4
Duzib138G0157 Durio zibethinus HOM05D003330 ORTHO05D003805 2.7e-09 65.1 73 53.4
Nitab4.5_0003020g0100 Nicotiana tabacum HOM05D003330 ORTHO05D003805 2.7e-09 65.1 72 51.4
PGSC0003DMG400020105 Solanum tuberosum HOM05D003330 ORTHO05D003805 2.7e-09 65.1 71 52.1
Actinidia30042 Actinidia chinensis HOM05D003330 ORTHO05D003805 3.5e-09 64.7 74 55.4
Duzib211G0662 Durio zibethinus HOM05D003330 ORTHO05D003805 3.5e-09 64.7 74 58.1
Lj2C1122T12 Lonicera japonica HOM05D003330 ORTHO05D003805 3.5e-09 64.7 72 54.2
Nn1g08206 Nelumbo nucifera HOM05D003330 ORTHO05D003805 3.5e-09 64.7 72 50.0
TPR.G29158 Trifolium pratense HOM05D003330 ORTHO05D003805 3.5e-09 64.7 71 52.1
TAR365G0843 Trochodendron aralioides HOM05D003330 ORTHO05D003805 3.5e-09 64.7 73 57.5
CANSAT01G2062 Cannabis sativa HOM05D003330 ORTHO05D003805 4.5e-09 64.3 73 56.2
CiPaw.13G050400 Carya illinoinensis HOM05D003330 ORTHO05D003805 4.5e-09 64.3 73 56.2
Manes.12G049200 Manihot esculenta HOM05D003330 ORTHO05D003805 4.5e-09 64.3 73 52.1
Medtr7g055700 Medicago truncatula HOM05D003330 ORTHO05D003805 4.5e-09 64.3 40 77.5
PGR083G2466 Punica granatum HOM05D003330 ORTHO05D003805 4.5e-09 64.3 71 54.9
Gohir.A11G140200 Gossypium hirsutum HOM05D003330 ORTHO05D003805 5.9e-09 63.9 54 64.8
PSO017G6109 Papaver somniferum HOM05D003330 ORTHO05D003805 5.9e-09 63.9 72 52.8
TAR636G1967 Trochodendron aralioides HOM05D003330 ORTHO05D003805 5.9e-09 63.9 73 54.8
Actinidia23391 Actinidia chinensis HOM05D003330 ORTHO05D003805 7.7e-09 63.5 74 55.4
EL10Ac4g09084 Beta vulgaris HOM05D003330 ORTHO05D003805 7.7e-09 63.5 73 52.1
Sabra02G0188100 Salix brachista HOM05D003330 ORTHO05D003805 7.7e-09 63.5 72 51.4
Sp3g06200 Schrenkiella parvula HOM05D003330 ORTHO05D003805 7.7e-09 63.5 71 54.9
Solyc06g083230.3 Solanum lycopersicum HOM05D003330 ORTHO05D003805 7.7e-09 63.5 71 52.1
Sopen06g034620 Solanum pennellii HOM05D003330 ORTHO05D003805 7.7e-09 63.5 71 52.1
Thecc.01G216800 Theobroma cacao HOM05D003330 ORTHO05D003805 7.7e-09 63.5 73 52.1
MSTRG.18828 Avicennia marina HOM05D003330 ORTHO05D003805 1.3e-08 62.8 73 52.1
Migut.N00638 Erythranthe guttata HOM05D003330 ORTHO05D003805 1.3e-08 62.8 73 50.7
Manes.13G051100 Manihot esculenta HOM05D003330 ORTHO05D003805 1.3e-08 62.8 74 47.3
CAN.G874.15 Capsicum annuum HOM05D003330 ORTHO05D003805 1.7e-08 62.4 71 53.5
Glyma.18G158900 Glycine max HOM05D003330 ORTHO05D003805 1.7e-08 62.4 71 50.7
Phvul.008G132600 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 1.7e-08 62.4 39 79.5
Hund18440 Selenicereus undatus HOM05D003330 ORTHO05D003805 1.7e-08 62.4 76 46.1
THA.LOC104818979 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 1.7e-08 62.4 67 52.2
VMungo0331G0017 Vigna mungo HOM05D003330 ORTHO05D003805 1.7e-08 62.4 55 63.6
BcaB04g21319 Brassica carinata HOM05D003330 ORTHO05D003805 2.2e-08 62.0 75 50.7
A02p37600 Brassica napus HOM05D003330 ORTHO05D003805 2.2e-08 62.0 71 47.9
BraA02t08744Z Brassica rapa HOM05D003330 ORTHO05D003805 2.2e-08 62.0 71 47.9
FvH4_2g18370 Fragaria vesca HOM05D003330 ORTHO05D003805 2.2e-08 62.0 73 52.1
FAN15G2534 Fragaria x ananassa HOM05D003330 ORTHO05D003805 2.2e-08 62.0 73 52.1
FAN24G2302 Fragaria x ananassa HOM05D003330 ORTHO05D003805 2.2e-08 62.0 73 52.1
HanXRQChr01g0015341 Helianthus annuus HOM05D003330 ORTHO05D003805 2.2e-08 62.0 39 79.5
Oeu009708.1 Olea europaea HOM05D003330 ORTHO05D003805 2.2e-08 62.0 74 54.1
RcHm_v2.0_Chr6g0283751 Rosa chinensis HOM05D003330 ORTHO05D003805 2.2e-08 62.0 73 53.4
VMungo1383G0348 Vigna mungo HOM05D003330 ORTHO05D003805 2.2e-08 62.0 73 53.4
BcaC03g17663 Brassica carinata HOM05D003330 ORTHO05D003805 2.9e-08 61.6 67 50.7
C02p56690 Brassica napus HOM05D003330 ORTHO05D003805 2.9e-08 61.6 67 50.7
BolC2t11730H Brassica oleracea HOM05D003330 ORTHO05D003805 2.9e-08 61.6 67 50.7
CDE05G3099 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 2.9e-08 61.6 40 77.5
Lsat_1_v5_gn_9_17281 Lactuca sativa HOM05D003330 ORTHO05D003805 2.9e-08 61.6 38 81.6
Potri.014G195000 Populus trichocarpa HOM05D003330 ORTHO05D003805 2.9e-08 61.6 72 48.6
QL09p049903 Quercus lobata HOM05D003330 ORTHO05D003805 2.9e-08 61.6 72 50.0
GSVIVG01019962001 Vitis vinifera HOM05D003330 ORTHO05D003805 2.9e-08 61.6 51 64.7
EL10Ac6g13981 Beta vulgaris HOM05D003330 ORTHO05D003805 3.8e-08 61.2 73 49.3
Nn1g07549 Nelumbo nucifera HOM05D003330 ORTHO05D003805 3.8e-08 61.2 72 50.0
Sp2g18970 Schrenkiella parvula HOM05D003330 ORTHO05D003805 3.8e-08 61.2 39 74.4
SEGI_24025 Sequoiadendron giganteum HOM05D003330 ORTHO05D003805 3.8e-08 61.2 52 61.5
Aa31LG5G17840 Aethionema arabicum HOM05D003330 ORTHO05D003805 5.0e-08 60.8 73 50.7
ATR0561G197 Amborella trichopoda HOM05D003330 ORTHO05D003805 5.0e-08 60.8 50 60.0
A05p40970 Brassica napus HOM05D003330 ORTHO05D003805 5.0e-08 60.8 72 51.4
ClCG09G008720 Citrullus lanatus HOM05D003330 ORTHO05D003805 5.0e-08 60.8 63 58.7
Thhalv10020678m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 5.0e-08 60.8 72 52.8
FAN27G2838 Fragaria x ananassa HOM05D003330 ORTHO05D003805 5.0e-08 60.8 73 50.7
Glyma.08G347400 Glycine max HOM05D003330 ORTHO05D003805 5.0e-08 60.8 38 78.9
Ah.08g214760 Amaranthus hybridus HOM05D003330 ORTHO05D003805 6.5e-08 60.5 71 47.9
Haze_03351 Corylus avellana HOM05D003330 ORTHO05D003805 6.5e-08 60.5 72 52.8
CsaV3_1G041250 Cucumis sativus L. HOM05D003330 ORTHO05D003805 6.5e-08 60.5 63 58.7
CsaV3_7G026240 Cucumis sativus L. HOM05D003330 ORTHO05D003805 6.5e-08 60.5 63 58.7
ECA248G3375 Erigeron canadensis HOM05D003330 ORTHO05D003805 6.5e-08 60.5 72 51.4
Hund05586 Selenicereus undatus HOM05D003330 ORTHO05D003805 6.5e-08 60.5 72 47.2
Aqoxy5G00019 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 8.5e-08 60.1 77 48.1
EL10Ac6g13228 Beta vulgaris HOM05D003330 ORTHO05D003805 1.1e-07 59.7 73 47.9
BcaB07g30035 Brassica carinata HOM05D003330 ORTHO05D003805 1.1e-07 59.7 39 69.2
Peaxi162Scf00487g00619 Petunia axillaris HOM05D003330 ORTHO05D003805 1.1e-07 59.7 38 76.3
Aqoxy4G02436 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 1.5e-07 59.3 77 46.8
AT3G07270 Arabidopsis thaliana HOM05D003330 ORTHO05D003805 1.5e-07 59.3 39 76.9
BcaC05g29742 Brassica carinata HOM05D003330 ORTHO05D003805 1.5e-07 59.3 39 76.9
BcaC05g29852 Brassica carinata HOM05D003330 ORTHO05D003805 1.5e-07 59.3 39 76.9
C05p60090 Brassica napus HOM05D003330 ORTHO05D003805 1.5e-07 59.3 74 50.0
BolC5t34662H Brassica oleracea HOM05D003330 ORTHO05D003805 1.5e-07 59.3 74 50.0
Carub.0003s0680 Capsella rubella HOM05D003330 ORTHO05D003805 1.5e-07 59.3 39 76.9
MELO3C021071.2 Cucumis melo HOM05D003330 ORTHO05D003805 1.5e-07 59.3 60 60.0
PSO210G4671 Papaver somniferum HOM05D003330 ORTHO05D003805 1.5e-07 59.3 76 47.4
BNapus_Darmor_BZH_scaffold_109p00160 Brassica napus HOM05D003330 ORTHO05D003805 1.9e-07 58.9 72 51.4
BolC1t05562H Brassica oleracea HOM05D003330 ORTHO05D003805 1.9e-07 58.9 72 51.4
BraA01t04390Z Brassica rapa HOM05D003330 ORTHO05D003805 1.9e-07 58.9 72 51.4
Oeu023105.2 Olea europaea HOM05D003330 ORTHO05D003805 1.9e-07 58.9 74 51.4
HPP92_013633 Vanilla planifolia HOM05D003330 ORTHO05D003805 1.9e-07 58.9 38 73.7
SalBow6G2435 Salvia bowleyana HOM05D003330 ORTHO05D003805 2.5e-07 58.5 50 60.0
SGA_v2.0_scaffold77G25273 Striga asiatica HOM05D003330 ORTHO05D003805 2.5e-07 58.5 67 53.7
CARHR081920 Cardamine hirsuta HOM05D003330 ORTHO05D003805 3.2e-07 58.2 72 47.2
Pp3c7_8060 Physcomitrium patens HOM05D003330 ORTHO05D003805 3.2e-07 58.2 66 47.0
AL3G18570 Arabidopsis lyrata HOM05D003330 ORTHO05D003805 4.2e-07 57.8 72 48.6
TWI36G0434 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 5.5e-07 57.4 73 49.3
TWI75G0253 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 5.5e-07 57.4 73 50.7
AUR62016529 Chenopodium quinoa HOM05D003330 ORTHO05D003805 7.2e-07 57.0 71 46.5
MBI07_g27660_MAGBIO Magnolia biondii HOM05D003330 ORTHO05D003805 7.2e-07 57.0 40 70.0
Atru.chr6.1444 Acer truncatum HOM05D003330 ORTHO05D003805 9.4e-07 56.6 74 48.6
AUR62001147 Chenopodium quinoa HOM05D003330 ORTHO05D003805 1.6e-06 55.8 71 45.1
unitig_0.g1214 Utricularia gibba HOM05D003330 ORTHO05D003805 1.6e-06 55.8 39 71.8
Zm00001eb067370 Zea mays HOM05D003330 ORTHO05D003805 1.6e-06 55.8 75 45.3
Atru.chr1.3019 Acer truncatum HOM05D003330 ORTHO05D003805 2.7e-06 55.1 74 48.6
Sed0013413 Sechium edule HOM05D003330 ORTHO05D003805 2.7e-06 55.1 35 74.3
Zm00001eb432940 Zea mays HOM05D003330 ORTHO05D003805 2.7e-06 55.1 39 66.7
Nitab4.5_0000403g0090 Nicotiana tabacum HOM05D003330 ORTHO05D003805 6.1e-06 53.9 38 71.1
Ah.08g214460 Amaranthus hybridus HOM05D003330 ORTHO05D003805 8.0e-06 53.5 71 42.3
Sed0021953 Sechium edule HOM05D003330 ORTHO05D003805 8.0e-06 53.5 60 56.7


User provided reference genes

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