Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 5.8e-166 587.4 282 100.0
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.2e-147 526.6 279 90.0
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.5e-139 498.4 276 85.9
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 2.2e-133 479.2 263 85.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 2.9e-133 478.8 281 81.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.9e-133 478.0 293 78.8
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.4e-132 476.5 277 81.2
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.6e-131 471.5 281 80.1
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.0e-131 471.1 281 78.3
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.3e-130 469.2 272 80.1
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 8.7e-130 467.2 281 78.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.4e-127 459.9 281 76.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 4.0e-127 458.4 277 79.4
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 6.9e-127 457.6 278 76.6
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 9.0e-127 457.2 279 76.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.3e-125 453.4 281 76.5
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 5.5e-124 448.0 271 74.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.2e-123 446.8 281 75.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 6.1e-123 444.5 273 74.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.9e-123 444.1 270 77.8
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.3e-122 443.4 281 74.7
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.8e-122 443.0 271 76.0
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.3e-122 442.6 275 76.0
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 8.7e-122 440.7 279 73.8
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.1e-121 440.3 280 73.6
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.3e-121 438.7 270 73.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 9.7e-121 437.2 277 73.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.6e-120 436.4 279 74.9
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 6.3e-120 434.5 277 73.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.1e-119 431.8 282 73.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.3e-117 426.8 269 72.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.2e-117 426.0 281 70.5
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.1e-116 423.7 271 72.3
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-116 422.9 265 72.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.5e-116 422.5 275 69.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 5.5e-116 421.4 273 72.9
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 7.2e-116 421.0 281 68.0
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 9.4e-116 420.6 277 71.5
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.2e-115 420.2 275 69.1
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 4.6e-115 418.3 279 69.5
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 6.1e-115 417.9 278 70.5
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.7e-114 414.5 282 69.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 6.7e-114 414.5 282 69.5
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 6.7e-114 414.5 281 68.0
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.1e-113 413.7 282 69.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-113 413.7 279 69.9
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.4e-113 411.0 282 68.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.7e-112 409.8 277 69.3
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.7e-112 409.8 277 69.7
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.7e-112 408.7 272 68.4
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.8e-112 408.3 279 68.1
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.8e-111 406.4 280 67.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 2.4e-111 406.0 282 68.4
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 3.1e-111 405.6 277 70.0
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.3e-111 404.8 271 67.5
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 9.1e-111 404.1 268 70.5
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 9.1e-111 404.1 280 67.9
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-110 403.7 278 69.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.0e-110 402.9 266 70.3
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.5e-110 401.7 267 68.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.0e-109 400.6 280 67.9
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.7e-109 399.8 281 68.0
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.2e-109 399.4 277 69.3
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 2.9e-109 399.1 281 68.7
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 5.0e-109 398.3 278 68.0
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.9e-108 396.4 278 67.6
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.5e-108 396.0 267 68.2
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 4.2e-108 395.2 280 66.8
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 5.5e-108 394.8 265 69.1
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 2.7e-107 392.5 276 64.1
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.7e-107 392.5 278 66.9
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.6e-107 392.1 278 67.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 4.7e-107 391.7 278 66.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 4.7e-107 391.7 278 66.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 6.1e-107 391.3 281 66.5
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 6.1e-107 391.3 280 66.4
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.9e-106 388.7 281 64.8
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.7e-106 387.9 278 65.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 8.8e-106 387.5 280 64.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-105 387.1 268 69.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.4e-105 385.2 278 64.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.4e-105 385.2 268 65.7
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 5.7e-105 384.8 281 66.2
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.7e-105 384.0 268 65.3
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-103 380.2 276 64.9
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.4e-103 379.4 281 63.0
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 3.1e-103 379.0 281 63.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 3.1e-103 379.0 281 63.0
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 3.1e-103 379.0 282 65.2
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.3e-103 378.3 268 63.4
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.6e-102 375.9 275 63.3
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.7e-101 373.2 268 63.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.7e-101 373.2 267 64.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 2.2e-101 372.9 270 66.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 6.5e-101 371.3 270 65.9
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-100 370.2 281 64.4
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.9e-100 369.8 277 60.3
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 7.2e-100 367.9 271 62.7
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.0e-98 362.5 270 61.5
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.7e-98 361.3 267 61.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 3.3e-97 359.0 269 66.9
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 7.2e-92 341.3 271 58.7
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 6.8e-90 334.7 237 69.2
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 8.8e-90 334.3 271 60.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 3.4e-89 332.4 333 52.3
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 2.2e-88 329.7 280 55.7
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 5.9e-86 321.6 266 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.7e-86 321.2 250 60.0
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.2e-82 308.5 268 58.2
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.3e-80 301.2 276 54.7
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 9.1e-79 297.7 285 52.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.2e-78 297.4 195 71.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.0e-77 294.3 270 54.1
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 8.6e-77 291.2 267 56.2
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.6e-70 270.4 177 71.8
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.4e-66 257.3 191 61.8
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.2e-66 255.4 219 56.2
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.8e-62 241.5 276 47.8
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.8e-59 233.0 137 81.0
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.2e-58 228.8 276 45.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 4.9e-56 222.2 270 44.1
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 8.1e-51 204.9 137 66.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.9e-47 193.7 178 53.4
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 7.8e-46 188.3 253 41.5
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 8.1e-43 178.3 137 61.3
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.4e-42 177.6 289 38.1
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 4.6e-38 162.5 101 71.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.9e-36 157.1 294 35.0
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.3e-36 155.2 156 51.9
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.1e-34 151.4 299 34.4
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.4e-26 123.6 289 31.8
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 9.0e-26 121.7 70 72.9
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.5e-25 119.4 299 30.4
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.6e-25 118.6 98 55.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.7e-24 117.5 75 74.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.2e-24 117.1 122 46.7
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 2.9e-24 116.7 86 62.8
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.1e-22 110.5 80 63.8
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.7e-14 83.6 52 63.5
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-13 81.3 71 53.5
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 2.4e-10 70.5 67 50.7
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.3e-08 64.7 37 70.3
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.4e-07 61.2 104 34.6
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.5e-07 60.5 64 45.3
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.8 37 62.2


User provided reference genes

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