Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.6e-42 175.6 86 100.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 5.1e-41 170.6 88 97.7
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 2.6e-37 158.3 88 88.6
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.7e-34 148.3 86 86.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 6.7e-33 143.7 88 84.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 2.3e-25 118.6 86 69.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 6.7e-25 117.1 83 69.9
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.4e-22 109.4 87 58.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 5.0e-20 100.9 84 58.3
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 4.7e-18 94.4 80 60.0
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.4e-17 92.8 81 56.8
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.1e-14 83.2 87 49.4
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-13 79.0 86 48.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.7e-13 78.6 85 48.2
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.7e-13 78.6 50 66.0
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.7e-13 78.6 78 48.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.5e-13 78.2 80 48.8
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 3.5e-13 78.2 87 51.7
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.9e-13 77.4 85 48.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 7.7e-13 77.0 100 42.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.7e-13 77.0 82 46.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.0e-12 76.6 95 48.4
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.0e-12 76.6 95 48.4
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.0e-12 76.6 96 45.8
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.9e-12 75.1 76 44.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 2.9e-12 75.1 90 43.3
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-12 74.7 87 42.5
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-12 74.7 87 42.5
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.8e-12 74.7 86 40.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.0e-12 74.3 81 44.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-12 74.3 93 40.9
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-12 74.3 95 46.3
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.0e-12 74.3 93 41.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.0e-12 74.3 93 41.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 5.0e-12 74.3 81 46.9
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 5.0e-12 74.3 78 47.4
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.6e-12 73.6 87 44.8
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-12 73.6 94 39.4
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-11 73.2 77 42.9
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-11 73.2 83 45.8
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-11 73.2 94 42.6
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-11 73.2 87 43.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-11 72.8 52 51.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-11 72.4 96 38.5
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.9e-11 72.4 97 41.2
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.9e-11 72.4 55 49.1
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-11 72.4 95 41.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-11 72.4 87 43.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-11 72.4 60 48.3
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-11 72.4 60 48.3
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-11 72.0 93 40.9
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-11 71.6 52 51.9
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.3e-11 71.6 97 41.2
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 3.3e-11 71.6 78 39.7
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 4.2e-11 71.2 92 40.2
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-11 71.2 98 36.7
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 5.5e-11 70.9 95 42.1
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 5.5e-11 70.9 82 45.1
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.2e-11 70.5 82 47.6
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 7.2e-11 70.5 53 49.1
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.2e-11 70.5 97 40.2
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.2e-11 70.5 92 41.3
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 7.2e-11 70.5 54 59.3
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 9.5e-11 70.1 88 39.8
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-10 69.7 91 41.8
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-10 69.7 90 40.0
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.6e-10 69.3 93 38.7
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.6e-10 69.3 53 50.9
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.6e-10 69.3 62 48.4
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-10 69.3 97 42.3
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-10 69.3 95 37.9
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.1e-10 68.9 92 37.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 2.1e-10 68.9 90 40.0
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-10 68.6 92 39.1
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-10 68.6 92 39.1
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 3.6e-10 68.2 94 40.4
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.6e-10 68.2 89 40.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.6e-10 68.2 82 42.7
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.6e-10 68.2 49 53.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 4.7e-10 67.8 98 32.7
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 4.7e-10 67.8 92 41.3
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 4.7e-10 67.8 99 39.4
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 6.1e-10 67.4 77 44.2
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-10 67.4 77 44.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-10 67.4 53 43.4
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-10 67.4 77 44.2
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 8.0e-10 67.0 81 42.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 8.0e-10 67.0 72 38.9
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.0e-10 67.0 51 52.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 86 38.4
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 86 38.4
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.0e-09 66.6 79 41.8
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-09 66.6 51 49.0
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.4e-09 66.2 49 49.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.4e-09 66.2 57 43.9
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.4e-09 66.2 58 53.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-09 66.2 85 43.5
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-09 66.2 90 37.8
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.8e-09 65.9 95 37.9
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 92 40.2
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 92 40.2
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.8e-09 65.9 85 41.2
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.3e-09 65.5 51 45.1
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.3e-09 65.5 86 39.5
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-09 65.5 80 40.0
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-09 65.5 91 36.3
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-09 65.5 49 51.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-09 65.5 91 37.4
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 2.3e-09 65.5 77 46.8
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 2.3e-09 65.5 95 40.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-09 65.1 89 40.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-09 65.1 53 47.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-09 65.1 52 51.9
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 3.0e-09 65.1 92 40.2
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 3.0e-09 65.1 51 49.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.0e-09 64.7 71 40.8
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.0e-09 64.7 51 51.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.0e-09 64.7 78 39.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.2e-09 64.3 53 45.3
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-09 64.3 51 49.0
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 5.2e-09 64.3 84 42.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-09 63.9 78 39.7
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-09 63.9 97 36.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-09 63.9 91 36.3
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 6.8e-09 63.9 94 38.3
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.9e-09 63.5 55 47.3
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.9e-09 63.5 89 38.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 8.9e-09 63.5 49 49.0
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 8.9e-09 63.5 83 41.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-08 63.2 50 46.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-08 63.2 77 40.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-08 63.2 81 39.5
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.5e-08 62.8 87 39.1
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.5e-08 62.8 81 40.7
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.5e-08 62.8 81 40.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-08 62.8 84 34.5
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-08 62.8 82 37.8
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-08 62.8 82 37.8
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.0e-08 62.4 77 39.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-08 62.4 53 47.2
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-08 62.4 101 36.6
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 2.0e-08 62.4 52 48.1
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-08 62.4 91 35.2
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.0e-08 62.4 82 40.2
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.0e-08 62.4 53 49.1
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-08 62.0 78 38.5
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-08 62.0 91 36.3
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.6e-08 62.0 93 40.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 3.4e-08 61.6 81 40.7
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.4e-08 61.6 93 38.7
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-08 61.2 78 38.5
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-08 61.2 89 33.7
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.4e-08 61.2 81 40.7
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.4e-08 61.2 80 36.2
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.5e-08 60.5 54 51.9
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 9.8e-08 60.1 79 39.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-07 59.7 56 37.5
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.7e-07 59.3 53 47.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.2e-07 58.9 85 36.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.8e-07 58.5 75 42.7
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-07 58.2 66 33.3
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 3.7e-07 58.2 53 41.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-07 57.8 81 34.6
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-07 57.8 90 33.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.3e-07 57.4 83 34.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.3e-07 57.4 84 31.0
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 6.3e-07 57.4 94 31.9
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 6.3e-07 57.4 86 38.4
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 6.3e-07 57.4 52 46.2
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.3e-07 57.0 47 46.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.3e-07 57.0 47 46.8
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 8.3e-07 57.0 93 32.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.4e-06 56.2 90 40.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-06 56.2 39 56.4
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-06 56.2 87 35.6
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-06 55.1 81 35.8


User provided reference genes

Program Settings