Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 2.4e-53 211.8 103 100.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 2.2e-38 162.2 87 89.7
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 3.2e-37 158.3 92 83.7
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 3.6e-33 144.8 92 79.3
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.1e-32 143.3 92 78.3
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.1e-32 143.3 92 76.1
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.4e-32 142.9 89 75.3
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 8.9e-32 140.2 86 77.9
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 5.8e-31 137.5 85 78.8
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 5.8e-31 137.5 84 83.3
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.7e-30 134.8 87 75.9
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.7e-28 128.6 92 70.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.7e-27 125.9 83 66.3
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 3.9e-27 124.8 76 75.0
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.6e-27 123.6 76 73.7
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 8.6e-27 123.6 76 73.7
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 8.6e-27 123.6 76 71.1
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-26 123.2 80 70.0
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.1e-26 123.2 76 72.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.5e-26 122.9 88 63.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.9e-26 122.5 76 68.4
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.9e-26 122.5 76 68.4
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.9e-26 122.5 77 70.1
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.5e-26 122.1 76 71.1
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.3e-26 120.6 83 65.1
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 9.5e-26 120.2 76 67.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 9.5e-26 120.2 80 67.5
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 9.5e-26 120.2 76 68.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 9.5e-26 120.2 76 71.1
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.2e-25 119.8 82 67.1
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-25 119.8 80 67.5
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.1e-25 119.0 76 69.7
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.1e-25 119.0 76 69.7
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.8e-25 118.6 80 65.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.8e-25 118.6 76 69.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.6e-25 118.2 94 61.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.6e-25 118.2 76 69.7
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 3.6e-25 118.2 80 66.2
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 8.1e-25 117.1 77 68.8
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 8.1e-25 117.1 80 63.8
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 8.1e-25 117.1 80 62.5
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 8.1e-25 117.1 84 65.5
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.1e-24 116.7 76 68.4
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.4e-24 116.3 85 63.5
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.4e-24 116.3 80 63.8
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.8e-24 115.9 80 63.8
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.8e-24 115.9 76 68.4
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.8e-24 115.9 76 68.4
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.8e-24 115.9 90 60.0
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.4e-24 115.5 80 63.8
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.4e-24 115.5 82 68.3
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 3.1e-24 115.2 76 68.4
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 3.1e-24 115.2 79 65.8
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 5.2e-24 114.4 80 63.8
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 5.2e-24 114.4 77 66.2
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.2e-24 114.4 82 67.1
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.2e-23 113.2 75 65.3
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.5e-23 112.8 80 60.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 1.5e-23 112.8 81 65.4
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.5e-23 112.8 81 65.4
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.0e-23 112.5 76 69.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.0e-23 112.5 76 65.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.6e-23 112.1 82 65.9
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 3.4e-23 111.7 76 64.5
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.4e-23 111.7 94 60.6
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 3.4e-23 111.7 85 58.8
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 3.4e-23 111.7 76 65.8
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.4e-23 111.7 76 64.5
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.8e-23 110.9 85 61.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.8e-23 110.9 85 61.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 5.8e-23 110.9 76 65.8
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 5.8e-23 110.9 80 58.8
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 5.8e-23 110.9 80 58.8
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 7.6e-23 110.5 75 62.7
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 7.6e-23 110.5 76 63.2
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 9.9e-23 110.2 76 61.8
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 9.9e-23 110.2 76 65.8
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.3e-22 109.8 76 61.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.3e-22 109.8 85 61.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 4.9e-22 107.8 76 63.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 8.4e-22 107.1 76 65.8
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.4e-21 105.5 76 60.5
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.4e-21 105.5 76 61.8
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 3.2e-21 105.1 81 60.5
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 5.4e-21 104.4 87 57.5
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 5.4e-21 104.4 83 59.0
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.6e-20 102.8 76 56.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.1e-20 102.4 80 56.2
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.1e-20 102.4 85 57.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 4.6e-20 101.3 78 64.1
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.0e-19 100.1 83 56.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-19 99.8 64 67.2
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 8.7e-19 97.1 84 51.2
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.5e-18 96.3 112 45.5
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-17 93.2 66 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 2.8e-17 92.0 86 52.3
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-16 90.1 76 56.6
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-16 89.7 64 60.9
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.2e-14 82.4 49 73.5
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 6.4e-14 80.9 54 63.0
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-13 80.1 53 64.2
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.1e-13 80.1 88 51.1
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.4e-13 79.7 84 54.8
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.9e-13 79.3 141 34.0
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.4e-13 79.0 53 67.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.2e-13 78.6 56 58.9
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-12 75.1 50 64.0
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.6e-12 74.7 77 48.1
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 6.0e-12 74.3 71 49.3
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 3.3e-10 68.6 76 47.4
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.6e-09 66.2 51 54.9
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.8e-09 65.5 81 38.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.9e-07 57.0 78 35.9


User provided reference genes

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