Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-67 259.6 123 100.0
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-44 183.0 111 78.4
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.6e-43 179.5 111 74.8
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 5.6e-41 171.0 112 71.4
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 7.9e-35 150.6 106 63.2
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 6.2e-32 141.0 98 64.3
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-29 131.7 94 60.6
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 8.7e-26 120.6 113 54.0
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-25 119.4 113 53.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 1.9e-25 119.4 113 53.1
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-25 119.0 113 53.1
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 3.3e-25 118.6 113 53.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 2.5e-20 102.4 100 51.0
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 1.5e-17 93.2 78 51.3
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 1.9e-17 92.8 120 40.0
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 2.5e-17 92.4 75 53.3
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.3e-17 91.7 111 41.4
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 4.3e-17 91.7 94 44.7
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 4.3e-17 91.7 78 51.3
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 7.4e-17 90.9 108 42.6
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.3e-16 90.1 94 46.8
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.3e-16 90.1 92 48.9
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.7e-16 88.6 94 44.7
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.8e-16 88.2 109 43.1
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 8.2e-16 87.4 92 47.8
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.1e-15 87.0 93 45.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.1e-15 85.5 94 41.5
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 4.1e-15 85.1 72 50.0
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 5.3e-15 84.7 93 44.1
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.9e-15 84.3 94 40.4
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.5e-14 83.2 98 42.9
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.5e-14 83.2 94 40.4
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-14 83.2 94 40.4
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.5e-14 83.2 94 42.6
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.5e-14 83.2 97 42.3
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.6e-14 82.4 93 41.9
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.5e-14 81.6 94 44.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.9e-14 81.3 94 43.6
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 5.9e-14 81.3 103 39.8
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.9e-14 81.3 103 39.8
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 7.7e-14 80.9 91 44.0
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 7.7e-14 80.9 86 45.3
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-13 80.5 103 39.8
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.3e-13 80.1 90 47.8
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.3e-13 80.1 93 40.9
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-13 80.1 93 43.0
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.2e-13 79.3 91 42.9
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 2.2e-13 79.3 91 42.9
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 2.9e-13 79.0 93 43.0
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.8e-13 78.6 72 44.4
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 6.5e-13 77.8 107 39.3
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.5e-13 77.4 78 46.2
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.1e-12 77.0 97 41.2
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 1.1e-12 77.0 75 46.7
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.4e-12 76.6 103 36.9
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-12 76.6 97 44.3
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.9e-12 76.3 115 36.5
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 1.9e-12 76.3 75 46.7
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.5e-12 75.9 105 41.0
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 5.5e-12 74.7 112 39.3
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 5.5e-12 74.7 72 47.2
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 5.5e-12 74.7 93 36.6
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 9.4e-12 73.9 96 41.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 9.4e-12 73.9 93 41.9
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 9.4e-12 73.9 120 37.5
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 9.4e-12 73.9 100 39.0
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.2e-11 73.6 93 46.2
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.2e-11 73.6 95 45.3
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.2e-11 73.6 112 38.4
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.6e-11 73.2 93 43.0
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.6e-11 73.2 93 43.0
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.7e-11 72.4 97 36.1
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.7e-11 71.6 92 39.1
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.0e-10 70.5 79 38.0
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.4e-10 70.1 93 36.6
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.3e-10 69.3 75 42.7
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.0e-10 68.9 77 41.6
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 3.9e-10 68.6 71 43.7
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.7e-10 67.8 67 41.8
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.7e-10 67.8 94 42.6
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 8.8e-10 67.4 77 42.9
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 8.8e-10 67.4 77 42.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.1e-09 67.0 76 44.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.1e-09 67.0 80 38.8
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.5e-09 66.6 94 42.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.0e-09 66.2 63 47.6
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 2.0e-09 66.2 77 44.2
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 2.0e-09 66.2 77 44.2
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 2.6e-09 65.9 88 38.6
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 5.7e-09 64.7 77 39.0
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 9.7e-09 63.9 63 44.4
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-08 63.5 91 40.7
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.7e-08 63.2 97 39.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.7e-08 63.2 97 39.2
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.7e-08 63.2 97 39.2
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.7e-08 62.0 63 46.0
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 4.8e-08 61.6 100 38.0
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.2e-08 60.8 111 36.0
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.1e-07 58.9 72 40.3
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 3.1e-07 58.9 125 32.8
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.3e-07 58.2 63 42.9
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.3e-07 58.2 75 41.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 9.1e-07 57.4 75 40.0
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-06 56.6 113 34.5
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-06 56.6 75 38.7
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-06 56.6 75 38.7
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 3.4e-06 55.5 75 38.7
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.4e-06 55.5 75 37.3
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.5e-06 55.1 104 36.5
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.5e-06 55.1 68 38.2
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 4.5e-06 55.1 100 37.0
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 7.7e-06 54.3 84 39.3
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 7.7e-06 54.3 104 33.7


User provided reference genes

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