Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22006 Trifolium pratense HOM05D004077 ORTHO05D004872 1.9e-46 188.7 89 100.0
Medtr4g106960 Medicago truncatula HOM05D004077 ORTHO05D004872 1.7e-26 122.5 61 95.1
Psat4g057720 Pisum sativum HOM05D004077 ORTHO05D004872 1.7e-26 122.5 61 95.1
TPR.G37440 Trifolium pratense HOM05D004077 ORTHO05D004872 4.8e-26 120.9 61 93.4
Ca_21911_v3 Cicer arietinum L. HOM05D004077 ORTHO05D004872 6.3e-26 120.6 61 93.4
Nn3g16881 Nelumbo nucifera HOM05D004077 ORTHO05D004872 8.3e-26 120.2 63 87.3
CiPaw.11G027500 Carya illinoinensis HOM05D004077 ORTHO05D004872 1.4e-25 119.4 61 91.8
Glyma.05G037000 Glycine max HOM05D004077 ORTHO05D004872 2.4e-25 118.6 61 91.8
QL10p011905 Quercus lobata HOM05D004077 ORTHO05D004872 2.4e-25 118.6 61 91.8
Duzib068G0125 Durio zibethinus HOM05D004077 ORTHO05D004872 3.1e-25 118.2 62 88.7
FvH4_5g05210 Fragaria vesca HOM05D004077 ORTHO05D004872 5.3e-25 117.5 61 90.2
Phvul.003G199700 Phaseolus vulgaris HOM05D004077 ORTHO05D004872 5.3e-25 117.5 61 90.2
RcHm_v2.0_Chr7g0193701 Rosa chinensis HOM05D004077 ORTHO05D004872 5.3e-25 117.5 61 90.2
VMungo1215G2971 Vigna mungo HOM05D004077 ORTHO05D004872 5.3e-25 117.5 62 88.7
Manes.14G066700 Manihot esculenta HOM05D004077 ORTHO05D004872 7.0e-25 117.1 61 88.5
Rhsim12G0164000 Rhododendron simsii HOM05D004077 ORTHO05D004872 7.0e-25 117.1 61 88.5
Aqoxy3G02964 Aquilegia oxysepala HOM05D004077 ORTHO05D004872 1.6e-24 115.9 61 88.5
Eucgr.B00369 Eucalyptus grandis HOM05D004077 ORTHO05D004872 1.6e-24 115.9 61 88.5
Atru.chr9.2453_Atru.chr9.2454 Acer truncatum HOM05D004077 ORTHO05D004872 2.0e-24 115.5 61 86.9
Migut.D01921 Erythranthe guttata HOM05D004077 ORTHO05D004872 2.0e-24 115.5 61 83.6
Manes.06G104100 Manihot esculenta HOM05D004077 ORTHO05D004872 2.0e-24 115.5 61 86.9
Prupe.5G174900 Prunus persica HOM05D004077 ORTHO05D004872 2.0e-24 115.5 61 86.9
Lj4g0025722 Lotus japonicus HOM05D004077 ORTHO05D004872 2.7e-24 115.2 61 88.5
TWI15G0436 Tripterygium wilfordii HOM05D004077 ORTHO05D004872 2.7e-24 115.2 61 85.2
EL10Ac5g10758 Beta vulgaris HOM05D004077 ORTHO05D004872 3.5e-24 114.8 61 86.9
Ciclev10020585m.g Citrus clementina HOM05D004077 ORTHO05D004872 3.5e-24 114.8 61 86.9
Dinv20664 Davidia involucrata HOM05D004077 ORTHO05D004872 3.5e-24 114.8 61 85.2
Nn4g22787 Nelumbo nucifera HOM05D004077 ORTHO05D004872 3.5e-24 114.8 61 86.9
Gorai.005G136200 Gossypium raimondii HOM05D004077 ORTHO05D004872 4.5e-24 114.4 61 85.2
MBI10_g10241_MAGBIO Magnolia biondii HOM05D004077 ORTHO05D004872 4.5e-24 114.4 61 85.2
MSTRG.23125 Avicennia marina HOM05D004077 ORTHO05D004872 5.9e-24 114.0 61 83.6
Cc04_g13750 Coffea canephora HOM05D004077 ORTHO05D004872 5.9e-24 114.0 61 85.2
Duzib205G1726 Durio zibethinus HOM05D004077 ORTHO05D004872 5.9e-24 114.0 61 85.2
Glyma.17G090200 Glycine max HOM05D004077 ORTHO05D004872 5.9e-24 114.0 61 86.9
Gohir.A03G096433 Gossypium hirsutum HOM05D004077 ORTHO05D004872 5.9e-24 114.0 61 85.2
CSS0015009 Camellia sinensis var. sinensis HOM05D004077 ORTHO05D004872 7.7e-24 113.6 61 85.2
Migut.I00021 Erythranthe guttata HOM05D004077 ORTHO05D004872 7.7e-24 113.6 61 83.6
Solyc03g114280.3 Solanum lycopersicum HOM05D004077 ORTHO05D004872 1.0e-23 113.2 61 85.2
Sopen03g033380 Solanum pennellii HOM05D004077 ORTHO05D004872 1.0e-23 113.2 61 85.2
Thecc.03G010600 Theobroma cacao HOM05D004077 ORTHO05D004872 1.0e-23 113.2 61 86.9
CANSAT80G1493 Cannabis sativa HOM05D004077 ORTHO05D004872 1.3e-23 112.8 61 86.9
Dinv09148 Davidia involucrata HOM05D004077 ORTHO05D004872 1.3e-23 112.8 61 83.6
Lalb_Chr13g0297851 Lupinus albus HOM05D004077 ORTHO05D004872 1.3e-23 112.8 61 85.2
MD14G1182400 Malus domestica HOM05D004077 ORTHO05D004872 1.3e-23 112.8 61 83.6
CsaV3_1G001570 Cucumis sativus L. HOM05D004077 ORTHO05D004872 1.7e-23 112.5 61 85.2
TAR371G1277 Trochodendron aralioides HOM05D004077 ORTHO05D004872 1.7e-23 112.5 61 85.2
unitig_749.g13473 Utricularia gibba HOM05D004077 ORTHO05D004872 1.7e-23 112.5 61 80.3
ECA246G0603 Erigeron canadensis HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 82.0
MD06G1175600 Malus domestica HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
Nitab4.5_0000003g0530 Nicotiana tabacum HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
Nitab4.5_0001017g0030 Nicotiana tabacum HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
Solyc06g071420.3 Solanum lycopersicum HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
Sopen06g027700 Solanum pennellii HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
PGSC0003DMG400027094 Solanum tuberosum HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
SGA_v2.0_scaffold90G27947 Striga asiatica HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 80.3
THA.LOC104818231 Tarenaya hassleriana HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
TAR629G0666 Trochodendron aralioides HOM05D004077 ORTHO05D004872 2.2e-23 112.1 61 83.6
BcaB05g22899 Brassica carinata HOM05D004077 ORTHO05D004872 2.9e-23 111.7 61 82.0
BcaC09g49837 Brassica carinata HOM05D004077 ORTHO05D004872 2.9e-23 111.7 61 82.0
BolC1t03179H Brassica oleracea HOM05D004077 ORTHO05D004872 2.9e-23 111.7 61 82.0
Lsat_1_v5_gn_5_17200 Lactuca sativa HOM05D004077 ORTHO05D004872 2.9e-23 111.7 61 83.6
Potri.012G079600 Populus trichocarpa HOM05D004077 ORTHO05D004872 2.9e-23 111.7 61 82.0
MELO3C017097.2 Cucumis melo HOM05D004077 ORTHO05D004872 3.8e-23 111.3 61 83.6
FAN13G2227 Fragaria x ananassa HOM05D004077 ORTHO05D004872 3.8e-23 111.3 66 83.3
HanXRQChr16g0517301 Helianthus annuus HOM05D004077 ORTHO05D004872 3.8e-23 111.3 61 82.0
PGR083G2191 Punica granatum HOM05D004077 ORTHO05D004872 3.8e-23 111.3 61 83.6
GSVIVG01007765001 Vitis vinifera HOM05D004077 ORTHO05D004872 3.8e-23 111.3 61 85.2
MSTRG.11443 Avicennia marina HOM05D004077 ORTHO05D004872 5.0e-23 110.9 61 80.3
Actinidia19095 Actinidia chinensis HOM05D004077 ORTHO05D004872 8.5e-23 110.2 61 82.0
AUR62008220 Chenopodium quinoa HOM05D004077 ORTHO05D004872 8.5e-23 110.2 58 86.2
AUR62030973 Chenopodium quinoa HOM05D004077 ORTHO05D004872 8.5e-23 110.2 58 86.2
PSO017G1896 Papaver somniferum HOM05D004077 ORTHO05D004872 8.5e-23 110.2 61 82.0
PSO478G1894 Papaver somniferum HOM05D004077 ORTHO05D004872 8.5e-23 110.2 61 82.0
Sp5g13990 Schrenkiella parvula HOM05D004077 ORTHO05D004872 8.5e-23 110.2 61 80.3
Potri.015G074900 Populus trichocarpa HOM05D004077 ORTHO05D004872 1.1e-22 109.8 61 82.0
Sed0017203 Sechium edule HOM05D004077 ORTHO05D004872 1.1e-22 109.8 61 83.6
C01p32380 Brassica napus HOM05D004077 ORTHO05D004872 1.5e-22 109.4 61 80.3
BraA01t02485Z Brassica rapa HOM05D004077 ORTHO05D004872 1.5e-22 109.4 61 80.3
Sed0006960 Sechium edule HOM05D004077 ORTHO05D004872 1.9e-22 109.0 61 82.0
ATR0730G177 Amborella trichopoda HOM05D004077 ORTHO05D004872 2.5e-22 108.6 61 80.3
HanXRQChr09g0272261 Helianthus annuus HOM05D004077 ORTHO05D004872 2.5e-22 108.6 61 78.7
THA.LOC104798981 Tarenaya hassleriana HOM05D004077 ORTHO05D004872 2.5e-22 108.6 61 78.7
AagrBONN_evm.TU.Sc2ySwM_117.106 Anthoceros agrestis HOM05D004077 ORTHO05D004872 3.2e-22 108.2 63 73.0
arahy.Tifrunner.gnm1.ann1.7S5VF9 Arachis hypogaea HOM05D004077 ORTHO05D004872 3.2e-22 108.2 61 78.7
A01p25360 Brassica napus HOM05D004077 ORTHO05D004872 3.2e-22 108.2 61 78.7
A06p19650 Brassica napus HOM05D004077 ORTHO05D004872 3.2e-22 108.2 61 80.3
BraA06t25045Z Brassica rapa HOM05D004077 ORTHO05D004872 3.2e-22 108.2 61 80.3
Aqoxy3G01025 Aquilegia oxysepala HOM05D004077 ORTHO05D004872 4.2e-22 107.8 61 80.3
Zm00001eb162790 Zea mays HOM05D004077 ORTHO05D004872 5.5e-22 107.5 61 80.3
Carub.0005s1410 Capsella rubella HOM05D004077 ORTHO05D004872 7.2e-22 107.1 61 78.7
MSTRG.4378 Avicennia marina HOM05D004077 ORTHO05D004872 9.4e-22 106.7 61 78.7
Os05g0145000 Oryza sativa ssp. japonica HOM05D004077 ORTHO05D004872 1.2e-21 106.3 61 78.7
Aa31LG4G16630 Aethionema arabicum HOM05D004077 ORTHO05D004872 1.6e-21 105.9 60 78.3
Thhalv10010884m.g Eutrema salsugineum HOM05D004077 ORTHO05D004872 1.6e-21 105.9 60 80.0
Lj1g0011621 Lotus japonicus HOM05D004077 ORTHO05D004872 1.6e-21 105.9 61 80.3
BcaB02g10676 Brassica carinata HOM05D004077 ORTHO05D004872 2.1e-21 105.5 61 77.0
SGA_v2.0_scaffold25G10850 Striga asiatica HOM05D004077 ORTHO05D004872 2.1e-21 105.5 60 78.3
vmacro16604 Vaccinium macrocarpon HOM05D004077 ORTHO05D004872 2.1e-21 105.5 74 71.6
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 2.7e-21 105.1 61 73.8
CsaV3_1G008430 Cucumis sativus L. HOM05D004077 ORTHO05D004872 2.7e-21 105.1 61 73.8
Glyma.04G182100 Glycine max HOM05D004077 ORTHO05D004872 2.7e-21 105.1 61 78.7
Lalb_Chr08g0236431 Lupinus albus HOM05D004077 ORTHO05D004872 3.6e-21 104.8 61 78.7
HPP92_003097 Vanilla planifolia HOM05D004077 ORTHO05D004872 3.6e-21 104.8 61 77.0
AL5G27310 Arabidopsis lyrata HOM05D004077 ORTHO05D004872 4.7e-21 104.4 61 75.4
BcaC07g39282 Brassica carinata HOM05D004077 ORTHO05D004872 4.7e-21 104.4 61 75.4
C08p22910 Brassica napus HOM05D004077 ORTHO05D004872 4.7e-21 104.4 61 75.4
BolC8t49927H Brassica oleracea HOM05D004077 ORTHO05D004872 4.7e-21 104.4 61 75.4
Lsat_1_v5_gn_4_75421 Lactuca sativa HOM05D004077 ORTHO05D004872 4.7e-21 104.4 61 73.8
PGSC0003DMG400024497 Solanum tuberosum HOM05D004077 ORTHO05D004872 4.7e-21 104.4 71 73.2
CARHR276610 Cardamine hirsuta HOM05D004077 ORTHO05D004872 1.0e-20 103.2 61 75.4
Oeu024688.1 Olea europaea HOM05D004077 ORTHO05D004872 1.0e-20 103.2 75 68.0
ECA232G0181 Erigeron canadensis HOM05D004077 ORTHO05D004872 1.4e-20 102.8 61 75.4
Glyma.06G183300 Glycine max HOM05D004077 ORTHO05D004872 1.4e-20 102.8 61 77.0
Lj5C123T9 Lonicera japonica HOM05D004077 ORTHO05D004872 1.8e-20 102.4 80 65.0
Gohir.D02G117400 Gossypium hirsutum HOM05D004077 ORTHO05D004872 2.3e-20 102.1 54 85.2
CARHR156710 Cardamine hirsuta HOM05D004077 ORTHO05D004872 3.0e-20 101.7 61 73.8
Mapoly0061s0121 Marchantia polymorpha HOM05D004077 ORTHO05D004872 6.8e-20 100.5 58 72.4
SMO367G0977 Selaginella moellendorffii HOM05D004077 ORTHO05D004872 8.8e-20 100.1 58 75.9
Sp2g25980 Schrenkiella parvula HOM05D004077 ORTHO05D004872 1.5e-19 99.4 61 73.8
arahy.Tifrunner.gnm1.ann1.TGZ6UB Arachis hypogaea HOM05D004077 ORTHO05D004872 2.0e-19 99.0 74 64.9
Hma1.2p1_0176F.1_g077530 Hydrangea macrophylla HOM05D004077 ORTHO05D004872 2.6e-19 98.6 82 62.2
Cpa.g.sc124.49 Carica papaya HOM05D004077 ORTHO05D004872 3.4e-19 98.2 90 57.8
ECA247G0373 Erigeron canadensis HOM05D004077 ORTHO05D004872 4.4e-19 97.8 61 70.5
COL.COLO4_04600 Corchorus olitorius HOM05D004077 ORTHO05D004872 8.3e-18 93.6 48 87.5
Pp3c5_22880 Physcomitrium patens HOM05D004077 ORTHO05D004872 8.3e-18 93.6 61 67.2
Oeu022165.5 Olea europaea HOM05D004077 ORTHO05D004872 1.4e-17 92.8 51 80.4
Nitab4.5_0000852g0060 Nicotiana tabacum HOM05D004077 ORTHO05D004872 3.1e-17 91.7 50 82.0
Sc12g0005380 Simmondsia chinensis HOM05D004077 ORTHO05D004872 3.1e-17 91.7 59 76.3
Peaxi162Scf00689g00326 Petunia axillaris HOM05D004077 ORTHO05D004872 2.0e-16 89.0 48 81.2
HanXRQChr10g0295751 Helianthus annuus HOM05D004077 ORTHO05D004872 7.7e-16 87.0 61 60.7
Sed0004154 Sechium edule HOM05D004077 ORTHO05D004872 5.0e-15 84.3 48 72.9
BcaB01g00856 Brassica carinata HOM05D004077 ORTHO05D004872 4.2e-14 81.3 57 66.7
Lsat_1_v5_gn_5_17220 Lactuca sativa HOM05D004077 ORTHO05D004872 8.0e-13 77.0 67 56.7
Peaxi162Scf00017g02833 Petunia axillaris HOM05D004077 ORTHO05D004872 1.8e-12 75.9 82 51.2
CBR_g41084 Chara braunii HOM05D004077 ORTHO05D004872 6.8e-12 73.9 51 66.7
HanXRQChr04g0101541 Helianthus annuus HOM05D004077 ORTHO05D004872 2.0e-11 72.4 49 61.2
Nitab4.5_0005862g0030 Nicotiana tabacum HOM05D004077 ORTHO05D004872 2.3e-07 58.9 32 84.4


User provided reference genes

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