Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.3e-25 119.0 63 100.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.0e-22 109.4 63 90.5
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-16 88.6 60 81.7
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.6e-15 85.5 60 76.7
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 3.0e-14 81.3 60 75.0
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.5e-13 79.0 60 71.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.5e-13 79.0 60 71.7
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.9e-13 78.6 60 70.0
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.5e-13 78.2 60 71.7
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.5e-13 78.2 60 71.7
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.5e-13 78.2 60 68.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 3.3e-13 77.8 60 70.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.7e-13 77.0 58 69.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.6e-12 75.5 60 68.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 2.8e-12 74.7 60 68.3
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.8e-11 72.0 60 65.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.4e-11 71.6 60 66.7
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.1e-11 71.2 60 65.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.3e-11 70.5 60 66.7
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 6.9e-11 70.1 60 61.7
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.2e-10 69.3 60 61.7
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.2e-10 69.3 58 62.1
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.5e-10 68.9 60 65.0
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.5e-10 68.9 58 62.1
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.5e-10 68.9 60 61.7
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.5e-10 68.9 60 65.0
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.0e-10 68.6 60 65.0
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.0e-10 68.6 60 61.7
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.0e-10 68.6 60 65.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.0e-10 68.6 60 65.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.6e-10 68.2 58 62.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 3.4e-10 67.8 58 63.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 4.5e-10 67.4 60 63.3
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 5.9e-10 67.0 60 60.0
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.9e-10 67.0 60 60.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 5.9e-10 67.0 60 60.0
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 5.9e-10 67.0 60 60.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 5.9e-10 67.0 58 60.3
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 5.9e-10 67.0 60 60.0
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 7.7e-10 66.6 58 62.1
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 7.7e-10 66.6 60 63.3
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.0e-09 66.2 60 60.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.3e-09 65.9 60 61.7
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.3e-09 65.9 60 60.0
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.3e-09 65.9 60 60.0
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.3e-09 65.9 60 60.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.3e-09 65.9 60 60.0
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.7e-09 65.5 60 60.0
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.7e-09 65.5 60 60.0
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.2e-09 65.1 60 58.3
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.9e-09 64.7 60 58.3
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 2.9e-09 64.7 60 58.3
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 5.0e-09 63.9 60 58.3
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.0e-09 63.9 60 58.3
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 5.0e-09 63.9 60 58.3
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 6.5e-09 63.5 58 60.3
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 6.5e-09 63.5 60 58.3
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 8.5e-09 63.2 58 60.3
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 8.5e-09 63.2 60 58.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 8.5e-09 63.2 60 58.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 8.5e-09 63.2 60 56.7
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.1e-08 62.8 60 56.7
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.1e-08 62.8 60 55.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.4e-08 62.4 57 57.9
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.9e-08 62.0 60 55.0
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.9e-08 62.0 60 55.0
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 2.5e-08 61.6 36 86.1
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 3.2e-08 61.2 58 55.2
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.2e-08 61.2 60 53.3
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 3.2e-08 61.2 60 53.3
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.2e-08 61.2 60 53.3
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 4.2e-08 60.8 57 52.6
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.2e-08 60.1 60 55.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.2e-08 60.1 60 55.0
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.2e-08 60.1 60 55.0
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.2e-08 60.1 60 55.0
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 7.2e-08 60.1 58 55.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 9.4e-08 59.7 60 58.3
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 9.4e-08 59.7 60 56.7
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.4e-08 59.7 60 53.3
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.4e-08 59.7 60 53.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 9.4e-08 59.7 60 55.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.2e-07 59.3 60 55.0
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-07 59.3 60 55.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.6e-07 58.9 60 55.0
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 2.1e-07 58.5 60 56.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-07 58.5 60 56.7
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-07 58.5 60 56.7
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 2.1e-07 58.5 60 56.7
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.1e-07 58.5 60 56.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.7e-07 58.2 60 56.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.7e-07 58.2 60 56.7
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.7e-07 58.2 58 51.7
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.7e-07 58.2 60 56.7
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.7e-07 58.2 58 53.4
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 3.6e-07 57.8 60 55.0
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.6e-07 57.8 60 55.0
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 4.6e-07 57.4 60 50.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.6e-07 57.4 60 51.7
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.6e-07 57.4 60 53.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 6.1e-07 57.0 60 55.0
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 7.9e-07 56.6 57 47.4
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.4e-06 55.8 57 50.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.3e-06 55.1 60 53.3
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 2.3e-06 55.1 60 53.3
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 3.0e-06 54.7 57 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 3.9e-06 54.3 60 48.3
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.9e-06 54.3 58 46.6


User provided reference genes

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