Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 5.0e-76 287.7 149 100.0
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 1.8e-54 216.1 144 78.5
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 2.9e-47 192.2 138 75.4
Medtr8g091950 Medicago truncatula HOM05D008407 ORTHO05D008048 3.7e-39 165.2 150 64.0
Glyma.05G184300 Glycine max HOM05D008407 ORTHO05D008048 6.2e-34 147.9 108 72.2
Lalb_Chr07g0184781 Lupinus albus HOM05D008407 ORTHO05D008048 8.1e-34 147.5 146 56.8
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 1.3e-28 130.2 144 53.5
arahy.Tifrunner.gnm1.ann1.80DI5I Arachis hypogaea HOM05D008407 ORTHO05D008048 3.3e-27 125.6 144 52.8
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 9.6e-27 124.0 148 48.6
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 1.2e-26 123.6 130 47.7
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 8.1e-26 120.9 154 48.1
COL.COLO4_03583 Corchorus olitorius HOM05D008407 ORTHO05D008048 1.1e-22 110.5 144 44.4
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 1.9e-22 109.8 149 47.7
arahy.Tifrunner.gnm1.ann1.FI1JAT Arachis hypogaea HOM05D008407 ORTHO05D008048 4.2e-22 108.6 145 49.0
Phvul.002G265200 Phaseolus vulgaris HOM05D008407 ORTHO05D008048 7.1e-22 107.8 148 50.7
arahy.Tifrunner.gnm1.ann1.18RYE7 Arachis hypogaea HOM05D008407 ORTHO05D008048 2.1e-21 106.3 145 48.3
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.3e-20 103.6 149 43.6
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.7e-20 103.2 149 43.6
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 3.9e-20 102.1 155 41.9
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 3.9e-20 102.1 149 43.0
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 3.9e-20 102.1 149 43.0
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 3.9e-20 102.1 149 43.0
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 6.6e-20 101.3 154 40.9
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 1.9e-19 99.8 153 43.1
Manes.13G079700 Manihot esculenta HOM05D008407 ORTHO05D008048 1.3e-18 97.1 137 40.9
COL.COLO4_11001 Corchorus olitorius HOM05D008407 ORTHO05D008048 1.6e-18 96.7 144 40.3
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 2.1e-18 96.3 134 40.3
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 2.8e-18 95.9 151 39.1
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 8.1e-18 94.4 134 41.0
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 1.4e-17 93.6 113 46.0
Thecc.01G114300 Theobroma cacao HOM05D008407 ORTHO05D008048 6.9e-17 91.3 154 40.3
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 1.5e-16 90.1 136 42.6
Gohir.D03G046566 Gossypium hirsutum HOM05D008407 ORTHO05D008048 1.3e-15 87.0 149 37.6
Gorai.003G047700 Gossypium raimondii HOM05D008407 ORTHO05D008048 1.3e-15 87.0 149 37.6
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 1.7e-15 86.7 147 35.4
MD01G1020600 Malus domestica HOM05D008407 ORTHO05D008048 8.4e-15 84.3 164 36.6
Duzib187G2009 Durio zibethinus HOM05D008407 ORTHO05D008048 2.4e-14 82.8 150 36.7
Ciclev10026701m.g Citrus clementina HOM05D008407 ORTHO05D008048 9.3e-14 80.9 106 41.5
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 1.6e-13 80.1 128 39.8
Cfa002761 Carpinus fangiana HOM05D008407 ORTHO05D008048 1.3e-12 77.0 143 37.8
Glyma.08G142200 Glycine max HOM05D008407 ORTHO05D008048 2.3e-12 76.3 71 60.6
CsaV3_6G042330 Cucumis sativus L. HOM05D008407 ORTHO05D008048 6.7e-12 74.7 98 45.9
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 6.7e-12 74.7 150 38.7
Gohir.D11G231800 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.5e-11 72.8 109 38.5
MELO3C007475.2 Cucumis melo HOM05D008407 ORTHO05D008048 4.3e-11 72.0 98 42.9
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 7.4e-11 71.2 144 33.3
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 7.4e-11 71.2 135 34.8
Potri.005G085000 Populus trichocarpa HOM05D008407 ORTHO05D008048 1.3e-10 70.5 111 36.9
Gorai.007G244900 Gossypium raimondii HOM05D008407 ORTHO05D008048 2.1e-10 69.7 108 37.0
PGSC0003DMG400026512 Solanum tuberosum HOM05D009551 ORTHO05D008048 2.1e-10 69.7 155 32.3
Gohir.A11G197700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.8e-10 69.3 97 39.2
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 2.8e-10 69.3 85 45.9
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 6.2e-10 68.2 144 31.9
Nitab4.5_0003757g0050 Nicotiana tabacum HOM05D006700 ORTHO05D008196 8.1e-10 67.8 82 47.6
CANSAT01G0822 Cannabis sativa HOM05D008407 ORTHO05D008048 1.8e-09 66.6 108 34.3
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 1.8e-09 66.6 141 38.3
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 2.4e-09 66.2 156 34.6
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 2.4e-09 66.2 149 32.9
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 3.1e-09 65.9 140 32.1
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 4.0e-09 65.5 101 33.7
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 5.3e-09 65.1 156 34.6
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 5.3e-09 65.1 141 31.9
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 5.3e-09 65.1 80 46.2
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 6.9e-09 64.7 141 34.8
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 1.2e-08 63.9 156 34.6
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 2.0e-08 63.2 125 32.8
A02p43510 Brassica napus HOM05D011184 ORTHO05D008048 2.6e-08 62.8 129 34.1
BolC3t18394H Brassica oleracea HOM05D011184 ORTHO05D008048 2.6e-08 62.8 94 38.3
BraA02t09278Z Brassica rapa HOM05D011184 ORTHO05D008048 2.6e-08 62.8 129 34.1
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 5.8e-08 61.6 96 40.6
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 5.8e-08 61.6 85 42.4
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 5.8e-08 61.6 96 40.6
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 5.8e-08 61.6 96 40.6
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 5.8e-08 61.6 85 42.4
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 7.6e-08 61.2 141 31.2
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 9.9e-08 60.8 94 37.2
C03p61340 Brassica napus HOM05D011184 ORTHO05D008048 9.9e-08 60.8 94 37.2
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 9.9e-08 60.8 139 31.7
THA.LOC104799297 Tarenaya hassleriana HOM05D011184 ORTHO05D008048 2.9e-07 59.3 117 34.2
BcaB02g09833 Brassica carinata HOM05D011184 ORTHO05D008048 4.9e-07 58.5 142 31.0
BolC2t12425H Brassica oleracea HOM05D011184 ORTHO05D008048 4.9e-07 58.5 140 32.1
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 6.4e-07 58.2 98 36.7
Gohir.A11G053700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 6.4e-07 58.2 111 35.1
Nitab4.5_0004977g0060 Nicotiana tabacum HOM05D017188 ORTHO05D008048 8.4e-07 57.8 96 36.5
BcaC03g18280 Brassica carinata HOM05D011184 ORTHO05D008048 1.1e-06 57.4 140 30.0
C02p63590 Brassica napus HOM05D011184 ORTHO05D008048 1.1e-06 57.4 140 30.0
BcaC07g41387 Brassica carinata HOM05D009551 ORTHO05D008048 1.4e-06 57.0 118 33.9
A06p31620 Brassica napus HOM05D011184 ORTHO05D008048 1.4e-06 57.0 94 35.1
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 1.4e-06 57.0 130 30.0
AL1G29020 Arabidopsis lyrata HOM05D009551 ORTHO05D008048 3.2e-06 55.8 132 33.3
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 4.2e-06 55.5 131 33.6
CARHR017320 Cardamine hirsuta HOM05D009551 ORTHO05D008048 9.3e-06 54.3 97 35.1
Gohir.D10G104500 Gossypium hirsutum HOM05D008407 ORTHO05D008048 9.3e-06 54.3 72 38.9
Gorai.011G114000 Gossypium raimondii HOM05D008407 ORTHO05D008048 9.3e-06 54.3 72 38.9


User provided reference genes

Program Settings