Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.0e-181 639.0 342 100.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 2.0e-67 260.4 227 70.9
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 2.6e-67 260.0 223 65.9
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 4.8e-66 255.8 227 63.0
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-51 208.0 181 65.7
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 5.9e-48 195.7 231 54.5
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.4e-44 184.5 200 55.5
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.0e-44 183.0 231 51.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.7e-42 177.6 226 49.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.9e-41 174.1 214 54.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.9e-41 174.1 184 57.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.8e-37 160.2 226 46.9
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 3.6e-37 159.8 218 50.0
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.8e-36 157.5 216 49.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.2e-32 144.8 238 42.0
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-32 143.7 196 48.0
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.2e-29 134.8 221 42.1
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 4.7e-29 132.9 169 49.1
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.7e-29 132.9 206 42.7
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.1e-29 132.1 181 47.0
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 3.1e-28 130.2 190 43.2
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.2e-28 129.4 221 43.4
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 1.5e-27 127.9 117 59.8
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.6e-27 127.1 173 46.8
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 3.4e-27 126.7 168 47.6
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.4e-27 126.3 209 43.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.3e-26 124.8 173 47.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.2e-26 124.0 207 40.6
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.9e-26 123.6 152 50.0
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 4.9e-26 122.9 219 40.2
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 8.3e-26 122.1 221 39.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.1e-25 121.7 304 33.6
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.1e-25 121.7 151 49.7
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.4e-25 121.3 85 75.3
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.2e-25 120.2 197 42.6
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 5.4e-25 119.4 162 48.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 5.4e-25 119.4 218 40.8
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.4e-25 119.4 162 46.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.4e-25 119.4 225 38.7
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 7.1e-25 119.0 155 48.4
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 7.1e-25 119.0 162 50.0
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 9.2e-25 118.6 329 31.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.2e-24 118.2 153 47.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.6e-24 117.9 206 38.3
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.6e-24 117.9 215 42.3
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.6e-24 116.3 219 38.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 7.8e-24 115.5 197 42.1
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.0e-23 115.2 171 42.7
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 3.0e-23 113.6 312 33.0
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 3.9e-23 113.2 214 38.8
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 3.9e-23 113.2 141 48.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 5.1e-23 112.8 180 41.7
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.3e-22 110.2 161 46.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 4.3e-22 109.8 209 38.3
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 5.6e-22 109.4 224 34.8
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 9.5e-22 108.6 228 34.2
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-21 108.2 179 42.5
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.6e-21 107.8 283 33.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.6e-21 107.8 159 44.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.8e-21 107.1 142 45.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-21 107.1 198 39.4
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.6e-21 106.7 295 35.9
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.4e-20 104.8 154 46.1
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 4.0e-20 103.2 134 47.0
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 4.0e-20 103.2 206 39.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 4.0e-20 103.2 273 31.9
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 6.8e-20 102.4 189 41.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-19 101.7 192 35.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.5e-19 101.3 115 48.7
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.0e-19 100.9 194 38.7
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 4.4e-19 99.8 132 45.5
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 9.9e-19 98.6 194 38.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-18 98.2 185 35.7
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.7e-18 97.8 204 34.8
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.7e-18 97.8 103 51.5
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 2.9e-18 97.1 98 53.1
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.9e-18 97.1 135 45.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 3.8e-18 96.7 178 36.0
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.8e-18 96.7 178 36.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.9e-18 96.3 175 38.9
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.4e-18 95.5 176 38.6
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-17 94.7 178 36.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.4e-17 94.7 177 36.7
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.9e-17 94.4 195 36.9
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 5.4e-17 92.8 177 39.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 5.4e-17 92.8 177 39.0
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.4e-17 92.8 158 39.9
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.2e-16 91.7 170 38.8
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.6e-16 91.3 189 37.6
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.7e-16 90.5 219 32.9
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.6e-16 89.7 126 40.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.6e-16 89.7 88 50.0
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 6.0e-16 89.4 129 38.8
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 6.0e-16 89.4 129 38.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 7.8e-16 89.0 170 37.6
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 7.8e-16 89.0 170 37.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 7.8e-16 89.0 127 40.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.0e-15 88.6 159 39.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.0e-15 88.6 185 35.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.3e-15 88.2 254 29.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.3e-15 88.2 112 41.1
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.7e-15 87.8 135 42.2
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.0e-15 87.0 163 35.6
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.9e-15 86.7 112 45.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 8.7e-15 85.5 150 35.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 8.7e-15 85.5 332 28.3
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.1e-14 85.1 183 34.4
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.1e-14 85.1 114 46.5
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.9e-14 84.3 169 35.5
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 2.5e-14 84.0 90 54.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 3.3e-14 83.6 183 33.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 4.3e-14 83.2 128 36.7
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 4.3e-14 83.2 173 32.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.3e-14 83.2 128 36.7
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.6e-14 82.8 116 39.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.1e-13 80.9 115 42.6
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.7e-13 79.7 216 27.8
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 6.2e-13 79.3 115 40.0
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.4e-12 77.4 128 40.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.1e-12 77.0 180 31.1
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 4.0e-12 76.6 266 27.8
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 9.0e-12 75.5 112 38.4
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.0e-12 75.5 140 35.7
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-11 74.7 181 32.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.5e-11 74.7 169 33.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.6e-11 73.9 138 34.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.9e-11 72.0 238 28.6
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.9e-10 70.5 111 40.5
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 2.9e-10 70.5 78 43.6
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.4e-10 69.3 146 35.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.4e-10 68.9 138 36.2
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.4e-10 68.9 138 36.2
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 8.4e-10 68.9 100 47.0
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.9e-09 67.8 100 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.2e-09 67.0 103 40.8
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 5.4e-09 66.2 30 100.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 9.3e-09 65.5 210 29.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.2e-08 65.1 150 36.7
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.1e-08 64.3 62 50.0
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.7e-08 63.9 136 36.0
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.7e-08 63.9 179 33.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.6e-07 59.3 160 33.1
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.5e-06 58.2 100 32.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.3e-06 56.6 214 26.2


User provided reference genes

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