Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.0e-62 242.3 125 100.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.4e-58 229.6 123 95.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-58 228.4 125 94.4
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.8e-58 226.9 124 93.5
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.1e-52 209.9 119 89.1
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.6e-51 206.1 123 82.9
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 5.2e-50 201.1 124 79.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 5.2e-50 201.1 123 81.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.7e-50 200.7 124 79.0
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 6.7e-50 200.7 119 83.2
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 6.7e-50 200.7 123 78.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-49 199.5 124 79.0
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-49 198.7 122 78.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.4e-49 198.0 123 77.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 4.4e-49 198.0 124 78.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 9.7e-49 196.8 124 78.2
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 9.7e-49 196.8 123 79.7
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.7e-48 196.1 120 77.5
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 124 76.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.2e-48 195.7 125 77.6
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.2e-48 195.7 126 77.8
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.8e-48 195.3 123 78.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.8e-48 195.3 124 77.4
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.8e-48 195.3 119 81.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.8e-48 195.3 125 79.2
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.8e-48 195.3 119 80.7
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.7e-48 194.9 123 75.6
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.7e-48 194.9 123 79.7
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.7e-48 194.9 126 77.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.7e-48 194.9 123 76.4
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 4.8e-48 194.5 125 76.0
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.3e-48 194.1 123 76.4
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.3e-48 194.1 123 75.6
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 8.2e-48 193.7 119 79.8
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 8.2e-48 193.7 123 75.6
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.1e-47 193.4 123 76.4
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.1e-47 193.4 123 75.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 124 74.2
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.1e-47 193.4 119 79.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.4e-47 193.0 125 77.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.4e-47 193.0 125 77.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.4e-47 193.0 125 77.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.8e-47 192.6 124 75.8
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-47 192.6 123 75.6
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-47 192.6 125 83.2
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.4e-47 192.2 122 77.0
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.1e-47 191.8 119 78.2
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.3e-47 191.0 121 75.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 7.0e-47 190.7 119 76.5
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 9.1e-47 190.3 125 76.8
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 9.1e-47 190.3 119 77.3
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 9.1e-47 190.3 117 79.5
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 9.1e-47 190.3 120 75.8
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.2e-46 189.9 115 80.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.2e-46 189.9 125 76.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.6e-46 189.5 125 75.2
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.7e-46 188.7 119 76.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.7e-46 188.7 123 75.6
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.5e-46 188.3 123 72.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.5e-46 188.3 126 74.6
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 3.5e-46 188.3 119 76.5
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 4.5e-46 188.0 119 75.6
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 4.5e-46 188.0 119 75.6
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 4.5e-46 188.0 119 75.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.5e-46 188.0 117 76.1
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 5.9e-46 187.6 118 74.6
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.9e-46 187.6 119 74.8
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.9e-46 187.6 119 74.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 5.9e-46 187.6 118 78.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 7.7e-46 187.2 119 75.6
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.7e-46 187.2 123 73.2
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.0e-45 186.8 127 71.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.0e-45 186.8 119 78.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-45 186.4 117 76.9
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.7e-45 186.0 119 75.6
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.7e-45 186.0 115 78.3
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.2e-45 185.7 119 75.6
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.8e-45 184.9 119 73.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 8.5e-45 183.7 124 71.8
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.1e-44 183.3 116 75.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.1e-44 183.3 124 71.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-44 183.0 123 73.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.5e-44 182.2 122 73.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.2e-44 181.8 122 73.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 5.5e-44 181.0 116 74.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 5.5e-44 181.0 122 70.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.2e-44 180.6 125 72.8
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 9.4e-44 180.3 114 76.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.6e-43 179.5 117 71.8
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 3.6e-43 178.3 119 70.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-42 176.8 117 70.1
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.0e-42 176.8 117 70.1
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.2e-41 173.3 110 76.4
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.5e-41 172.9 105 80.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-41 172.6 117 68.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.0e-41 172.6 117 69.2
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.0e-41 172.6 117 70.9
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.6e-41 172.2 108 77.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 3.4e-41 171.8 119 72.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.4e-41 171.8 125 69.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.3e-40 169.9 120 71.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.2e-40 169.1 119 71.4
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 3.7e-40 168.3 125 64.0
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 3.7e-40 168.3 112 71.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.7e-40 168.3 121 66.1
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 8.3e-40 167.2 122 72.1
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.4e-39 166.4 103 74.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.4e-39 166.4 118 71.2
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.0e-38 162.5 98 82.7
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 7.7e-38 160.6 119 67.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.7e-38 160.6 120 64.2
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-37 159.8 113 70.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 5.0e-37 157.9 98 80.6
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 6.5e-37 157.5 121 71.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 7.2e-36 154.1 124 62.9
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 9.5e-36 153.7 98 76.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-35 153.3 98 82.7
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.2e-35 153.3 124 63.7
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.6e-35 152.9 107 69.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.6e-35 151.8 124 63.7
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 6.1e-35 151.0 99 75.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 8.0e-35 150.6 119 67.2
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-34 149.4 90 78.9
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-33 146.4 98 72.4
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-33 146.4 98 72.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.6e-33 145.6 102 66.7
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.2e-32 142.5 117 63.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.8e-32 142.1 96 70.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.6e-30 136.3 83 77.1
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.6e-30 136.3 88 77.3
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.8e-29 131.7 86 74.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.5e-28 129.0 121 52.9
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 7.3e-28 127.5 83 69.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.6e-27 125.2 116 52.6
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 8.0e-27 124.0 107 57.9
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 8.0e-27 124.0 84 75.0
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.8e-26 122.9 123 56.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.0e-26 122.1 117 54.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.0e-26 121.7 116 55.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.2e-25 120.2 88 60.2
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.5e-25 119.8 118 49.2
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.5e-25 119.8 113 50.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.4e-25 118.6 115 49.6
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 4.9e-24 114.8 118 47.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.9e-24 114.8 117 52.1
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.4e-23 113.2 121 50.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.4e-23 112.5 117 53.0
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 9.2e-23 110.5 123 48.0
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 9.2e-23 110.5 118 45.8
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.0e-22 109.4 130 45.4
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-21 106.7 102 52.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.5e-20 102.4 76 72.4
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 8.9e-18 94.0 58 70.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 2.0e-17 92.8 61 70.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 8.9e-10 67.4 77 49.4
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 6.4e-08 61.2 53 52.8
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.4e-08 61.2 55 60.0


User provided reference genes

Program Settings