Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.1e-62 241.5 112 100.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.4e-48 193.7 112 77.7
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 4.8e-47 191.0 110 77.3
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.4e-45 184.9 110 76.4
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 7.6e-45 183.7 110 74.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 4.2e-43 177.9 110 71.8
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.5e-43 177.6 110 73.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.2e-42 176.4 110 75.5
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.1e-42 175.6 110 73.6
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.1e-42 175.6 110 71.8
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.7e-42 175.3 110 70.9
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.6e-42 174.5 110 70.9
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 6.1e-42 174.1 110 70.9
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.3e-41 172.9 110 70.9
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-41 172.2 110 69.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 3.9e-41 171.4 110 71.8
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 5.1e-41 171.0 110 69.1
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 6.7e-41 170.6 110 71.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.7e-41 170.6 110 70.0
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 8.7e-41 170.2 110 69.1
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-40 169.9 110 68.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.1e-40 169.9 110 69.1
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.5e-40 169.5 110 70.0
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 4.3e-40 167.9 110 70.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 5.7e-40 167.5 110 67.3
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.7e-40 167.5 110 67.3
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.7e-40 167.5 110 67.3
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.7e-40 166.8 110 67.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 9.7e-40 166.8 109 69.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.8e-39 165.2 110 67.3
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.7e-39 164.9 109 68.8
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.1e-38 163.3 110 65.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.4e-38 162.9 110 68.2
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.8e-38 162.5 110 66.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.8e-38 162.5 104 71.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.4e-38 162.2 110 69.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.4e-38 162.2 110 68.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.1e-38 161.8 110 63.6
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 5.3e-38 161.0 110 67.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 67.3
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 68.2
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 64.5
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 64.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 64.5
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 9.1e-38 160.2 110 68.2
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.5e-37 159.5 110 66.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.0e-37 159.1 110 64.5
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.0e-37 159.1 109 64.2
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.0e-37 159.1 110 66.4
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.6e-37 158.7 110 63.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 3.4e-37 158.3 109 62.4
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.4e-37 158.3 110 62.7
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.4e-37 158.3 110 63.6
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 4.5e-37 157.9 110 63.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.5e-37 157.9 110 63.6
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 5.9e-37 157.5 110 64.5
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.0e-36 156.8 110 66.4
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.3e-36 156.4 110 62.7
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.7e-36 156.0 110 63.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.2e-36 155.6 110 67.3
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.2e-36 155.6 110 65.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.2e-36 155.6 110 61.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.8e-36 154.8 110 61.8
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.0e-36 154.5 110 66.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.0e-36 154.5 110 62.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 5.0e-36 154.5 110 62.7
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.5e-36 154.1 110 61.8
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 8.5e-36 153.7 110 63.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.4e-35 152.9 91 76.9
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.4e-35 152.9 110 61.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.9e-35 152.5 110 63.6
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.9e-35 152.5 110 64.5
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.2e-35 150.6 111 65.8
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 7.2e-35 150.6 110 62.7
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.2e-34 149.8 110 60.9
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-34 149.8 110 60.9
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.2e-34 149.8 110 62.7
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.2e-34 149.8 110 59.1
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.2e-34 149.8 110 63.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.6e-34 149.4 110 61.8
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-34 149.1 110 60.9
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-34 148.7 111 64.9
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.7e-34 148.7 110 60.9
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.6e-34 148.3 112 59.8
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 6.1e-34 147.5 110 60.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-34 147.1 111 64.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-34 147.1 111 64.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 7.9e-34 147.1 110 60.9
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.9e-34 147.1 110 61.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-33 146.7 111 63.1
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-33 146.7 111 62.2
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.0e-33 146.7 110 61.8
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-33 146.4 110 59.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-33 146.4 110 59.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-33 146.4 110 59.1
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-33 146.4 111 64.0
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-33 146.0 111 64.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-33 145.2 109 59.6
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-33 145.2 111 61.3
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.9e-33 144.8 111 63.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-33 144.1 111 61.3
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 6.7e-33 144.1 111 61.3
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.5e-32 142.9 100 63.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.0e-32 142.5 109 56.9
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.0e-32 142.5 110 60.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-32 141.7 111 60.4
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.3e-32 141.7 110 58.2
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 9.7e-32 140.2 111 62.2
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.2e-31 139.0 110 56.4
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.7e-31 138.3 110 56.4
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 8.2e-31 137.1 112 59.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.2e-29 133.3 111 56.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-29 133.3 111 56.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.5e-29 132.9 75 77.3
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-29 132.1 77 71.4
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-29 132.1 77 71.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.2e-28 129.0 89 67.4
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.8e-28 128.3 110 53.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 5.2e-25 117.9 110 52.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 4.4e-24 114.8 110 50.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.2e-23 112.5 110 50.0
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-21 104.8 85 60.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.2e-20 102.4 53 79.2
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-20 100.5 74 62.2
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 7.2e-19 97.4 113 42.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.1e-18 95.9 112 42.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 8.0e-18 94.0 53 73.6
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.2e-16 90.1 102 45.1
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-16 89.7 48 81.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 9.4e-11 70.5 63 50.8
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 4.7e-10 68.2 58 56.9
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.1e-06 55.1 32 71.9


User provided reference genes

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