Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 0.0e+00 1192.6 642 100.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 2.2e-277 958.7 651 82.5
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 3.7e-253 878.2 646 77.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 6.6e-226 787.7 646 69.7
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 7.6e-222 774.2 652 68.6
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 6.4e-221 771.2 710 64.9
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.5e-217 760.0 650 66.9
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 2.0e-214 749.6 651 66.8
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 2.6e-214 749.2 650 66.6
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 1.6e-211 740.0 653 66.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 4.6e-203 711.8 669 63.5
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.3e-184 650.6 695 58.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 8.8e-154 548.1 649 53.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.2e-150 537.7 654 51.8
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 2.3e-149 533.5 651 51.9
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.9e-148 530.4 656 50.3
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.9e-148 530.4 662 51.1
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.3e-146 523.5 653 51.8
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.8e-146 521.9 661 50.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 4.4e-145 519.2 688 48.1
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 4.4e-145 519.2 652 52.1
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 7.5e-145 518.5 650 50.6
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 7.5e-145 518.5 683 48.2
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.8e-145 518.1 688 48.1
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 6.4e-144 515.4 650 50.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 4.1e-143 512.7 656 50.8
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.6e-142 510.8 655 50.5
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 9.5e-140 501.5 686 47.5
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.6e-139 500.7 654 49.2
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.6e-139 499.6 654 49.1
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.1e-138 498.0 683 48.5
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.4e-138 497.7 651 50.7
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.5e-137 494.2 698 47.7
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.6e-137 493.4 673 48.7
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.6e-137 493.4 657 46.9
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 5.8e-137 492.3 660 49.5
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 1.3e-136 491.1 488 59.8
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.9e-136 490.0 684 45.8
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 3.0e-133 479.9 674 47.8
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.0e-133 479.9 656 48.0
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 3.9e-133 479.6 661 48.4
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 5.0e-133 479.2 675 47.4
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 8.6e-133 478.4 661 47.5
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 7.3e-132 475.3 691 47.2
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.4e-130 471.1 676 46.0
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.4e-130 471.1 644 46.7
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 6.8e-130 468.8 674 46.9
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 3.4e-129 466.5 669 46.6
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 7.5e-129 465.3 721 45.1
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.2e-128 463.8 678 45.7
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.1e-127 461.5 682 46.3
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 2.4e-127 460.3 649 45.9
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.7e-126 456.8 676 46.4
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-126 456.1 684 45.0
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 5.6e-124 449.1 660 45.0
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 7.3e-124 448.7 659 45.4
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 3.6e-123 446.4 677 45.1
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 3.6e-123 446.4 660 45.9
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.6e-123 446.4 682 44.3
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 8.9e-122 441.8 683 45.5
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 2.6e-121 440.3 673 42.8
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 2.6e-121 440.3 671 45.0
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 2.9e-120 436.8 654 46.5
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 6.4e-120 435.6 332 71.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.1e-119 434.9 653 45.5
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.2e-119 433.3 684 44.9
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 4.1e-119 433.0 407 59.5
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 4.6e-118 429.5 655 44.1
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.0e-117 428.3 637 45.1
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 5.1e-117 426.0 676 43.8
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 6.6e-117 425.6 677 45.9
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.5e-116 424.5 665 45.7
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.5e-116 424.5 646 44.4
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 2.5e-116 423.7 664 42.5
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.6e-115 421.0 663 44.8
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.8e-115 420.2 664 43.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 3.6e-115 419.9 647 45.7
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 3.1e-114 416.8 670 43.3
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 6.9e-114 415.6 674 43.3
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 8.4e-112 408.7 342 67.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.9e-111 407.5 619 44.9
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.2e-111 406.8 645 43.7
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.4e-111 406.0 657 43.8
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-110 404.8 657 42.6
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 3.0e-109 400.2 606 43.9
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.3e-108 396.4 652 43.7
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.1e-107 394.0 664 43.4
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 8.1e-107 392.1 743 39.4
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.1e-106 390.2 527 46.9
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 5.3e-106 389.4 392 58.4
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.2e-103 380.2 678 41.9
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.0e-102 375.9 663 43.0
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 7.9e-102 375.6 652 42.0
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.5e-100 371.3 627 42.4
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.9e-100 370.9 660 42.4
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 9.9e-97 358.6 542 43.4
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 3.3e-92 343.6 527 45.0
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 4.8e-91 339.7 654 37.8
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 5.8e-89 332.8 647 39.6
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 6.5e-88 329.3 348 53.7
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.9e-87 327.8 348 53.2
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.5e-84 318.2 386 48.7
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 1.0e-72 278.9 675 36.4
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 5.9e-57 226.5 444 39.9
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 3.6e-54 217.2 217 55.3
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 8.0e-54 216.1 284 48.6
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.8e-53 214.9 540 32.6
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 5.7e-52 209.9 493 33.9
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 6.5e-48 196.4 287 44.6
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.0e-45 187.6 454 34.1
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 2.0e-44 184.9 574 29.4
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.4e-44 184.1 316 36.4
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 2.8e-43 181.0 122 73.8
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.4e-42 178.7 322 34.2
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.7e-40 171.8 225 49.3
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 3.0e-37 161.0 536 28.9
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.2e-36 159.1 112 70.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.5e-36 158.7 118 66.9
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 6.3e-35 153.3 118 64.4
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.1e-34 152.5 455 31.2
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 3.1e-34 151.0 193 47.2
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 1.6e-33 148.7 111 68.5
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 3.8e-32 144.1 112 67.9
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 6.1e-30 136.7 113 63.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 3.4e-28 131.0 334 35.0
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 8.3e-27 126.3 93 73.1
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.4e-26 125.6 89 70.8
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-25 120.6 89 67.4
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 5.6e-23 113.6 135 51.9
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.6e-23 113.6 224 33.9
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.8e-21 108.6 110 46.4
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 4.0e-21 107.5 135 50.4
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 6.8e-21 106.7 134 50.7
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 1.6e-17 95.5 367 26.4
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 4.6e-17 94.0 396 27.3
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.5e-15 89.0 85 55.3
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 2.0e-12 78.6 118 45.8
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.3e-08 65.9 53 60.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 7.3e-07 60.1 56 60.7


User provided reference genes

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