Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.2e-113 411.8 206 100.0
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 7.4e-94 347.4 176 98.9
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.6e-85 319.7 196 83.2
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 6.9e-84 314.3 176 88.1
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.9e-82 308.9 193 82.4
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 7.9e-80 300.8 177 85.3
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 7.9e-80 300.8 177 84.7
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.1e-77 292.7 177 81.4
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 7.6e-75 284.3 195 73.3
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.9e-74 282.3 171 80.7
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 7.2e-73 277.7 180 78.3
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 2.7e-72 275.8 182 76.9
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.6e-72 275.4 177 78.0
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 7.9e-72 274.2 176 77.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.7e-71 270.8 176 77.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 8.7e-71 270.8 170 78.8
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 2.5e-70 269.2 177 75.7
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.3e-70 268.9 171 77.8
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 5.7e-70 268.1 177 75.1
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.4e-70 267.7 175 76.6
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 1.6e-69 266.5 167 78.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 3.7e-69 265.4 185 73.0
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 4.8e-69 265.0 175 76.0
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.1e-68 263.8 171 75.4
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.1e-68 263.8 170 74.7
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.4e-68 263.5 176 73.9
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.4e-68 262.7 175 74.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 3.1e-68 262.3 182 72.0
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 3.1e-68 262.3 174 74.1
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 6.9e-68 261.2 178 73.0
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 6.9e-68 261.2 178 73.0
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 6.9e-68 261.2 178 73.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 9.1e-68 260.8 175 75.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.2e-67 260.4 169 75.7
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.5e-67 260.0 167 76.0
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.5e-67 260.0 175 73.7
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.0e-67 259.6 178 73.0
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.5e-67 258.5 171 76.0
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.9e-67 258.1 172 73.3
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 5.9e-67 258.1 169 71.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.7e-67 257.7 183 71.6
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.0e-66 257.3 165 76.4
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.0e-66 257.3 178 69.1
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.3e-66 256.9 178 73.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.3e-66 256.9 171 75.4
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.3e-66 256.9 172 73.3
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 2.2e-66 256.1 197 62.9
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 6.5e-66 254.6 174 70.7
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 6.5e-66 254.6 195 66.7
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.5e-65 252.7 177 70.6
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.5e-65 252.7 169 69.8
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 3.2e-65 252.3 172 73.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 3.2e-65 252.3 195 66.2
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 4.2e-65 251.9 177 70.6
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 7.2e-65 251.1 198 64.6
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 9.4e-65 250.8 175 72.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-64 250.4 165 73.9
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.6e-64 250.0 168 70.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.1e-64 249.6 177 70.6
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.1e-64 249.6 148 81.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 2.7e-64 249.2 177 69.5
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.6e-64 248.8 177 68.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 4.6e-64 248.4 170 68.8
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 4.6e-64 248.4 168 67.9
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 7.9e-64 247.7 177 68.9
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 7.9e-64 247.7 177 68.9
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.4e-63 246.9 178 70.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.8e-63 246.5 171 71.9
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.8e-63 246.5 171 71.9
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.3e-63 246.1 168 70.8
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.9e-63 245.4 182 67.6
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 3.9e-63 245.4 150 80.7
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 5.1e-63 245.0 162 75.9
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 8.8e-63 244.2 195 64.1
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 8.8e-63 244.2 178 69.7
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.1e-62 243.8 172 69.2
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 5.7e-62 241.5 175 68.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 5.7e-62 241.5 175 67.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 7.4e-62 241.1 187 65.8
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 7.4e-62 241.1 172 68.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.3e-61 240.4 195 63.6
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.7e-61 240.0 187 64.7
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.7e-61 240.0 175 68.0
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.8e-61 239.2 175 67.4
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.7e-61 238.8 176 68.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 6.3e-61 238.0 172 66.9
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 6.3e-61 238.0 187 64.7
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 6.3e-61 238.0 175 66.9
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 8.2e-61 237.7 165 66.7
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.4e-60 236.1 175 67.4
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 2.4e-60 236.1 175 66.3
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 6.9e-60 234.6 196 63.3
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.2e-59 233.8 172 67.4
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.6e-59 232.6 163 69.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.7e-58 229.9 157 71.3
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.9e-58 229.2 166 63.9
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 5.0e-58 228.4 169 65.7
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 5.0e-58 228.4 169 65.7
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 8.5e-58 227.6 173 66.5
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.4e-57 226.9 172 62.8
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.5e-57 226.1 173 65.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.0e-55 220.7 156 70.5
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.4e-55 220.3 168 63.1
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 3.9e-55 218.8 154 65.6
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.5e-54 216.9 154 66.2
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.5e-54 216.9 175 64.6
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.0e-54 216.5 167 66.5
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 5.7e-54 214.9 163 66.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 9.7e-54 214.2 172 65.1
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.7e-53 213.4 175 61.7
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.8e-53 212.6 131 83.2
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-52 209.9 154 65.6
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.1e-52 209.1 170 58.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.1e-52 209.1 170 58.2
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 3.1e-52 209.1 163 65.6
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 2.6e-51 206.1 177 60.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-50 202.2 177 60.5
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.8e-50 202.2 166 56.6
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.6e-48 196.8 194 52.6
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 3.6e-48 195.7 168 60.7
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 8.8e-47 191.0 175 56.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.0e-46 189.9 118 78.8
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.3e-46 189.1 125 75.2
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 7.5e-46 188.0 174 55.7
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.0e-44 181.4 125 72.0
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.9e-43 178.3 162 58.0
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.9e-42 176.0 122 68.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 5.5e-41 171.8 161 54.7
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.1e-40 169.9 180 47.2
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.7e-40 168.7 133 56.4
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 3.0e-39 166.0 163 54.0
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 5.2e-39 165.2 177 53.7
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 8.8e-39 164.5 112 77.7
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.4e-38 162.2 109 71.6
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 9.8e-38 161.0 110 69.1
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.0e-34 148.7 127 62.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 6.5e-34 148.3 171 43.3
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.9e-33 146.7 122 61.5
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 9.5e-33 144.4 177 42.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.6e-32 142.5 108 64.8
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 8.0e-32 141.4 177 48.6
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.6e-30 136.3 171 41.5
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.6e-30 136.3 89 74.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 9.8e-30 134.4 195 39.5
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.3e-25 119.0 70 78.6
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-24 116.7 111 48.6
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 6.1e-24 115.2 111 48.6
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-22 110.5 171 35.7
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-19 100.9 83 66.3
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.8e-15 87.0 54 72.2
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 6.8e-15 85.1 75 53.3
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 8.3e-13 78.2 58 67.2
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-12 77.4 65 61.5
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.6e-11 73.9 88 46.6
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 4.3e-09 65.9 50 64.0
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 9.5e-09 64.7 48 58.3


User provided reference genes

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