Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2179 Trifolium pratense HOM05D006928 ORTHO05D008618 1.2e-43 179.5 94 100.0
Psat7g048720 Pisum sativum HOM05D006928 ORTHO05D008618 8.7e-42 173.3 94 95.7
Lj4g0006915 Lotus japonicus HOM05D006928 ORTHO05D008618 6.2e-40 167.2 94 91.5
Glyma.05G188300 Glycine max HOM05D006928 ORTHO05D008618 1.4e-39 166.0 94 90.4
Glyma.08G146400 Glycine max HOM05D006928 ORTHO05D008618 5.3e-39 164.1 94 88.3
Phvul.002G269100 Phaseolus vulgaris HOM05D006928 ORTHO05D008618 4.9e-37 157.5 94 85.1
Cfa002868 Carpinus fangiana HOM05D006928 ORTHO05D008618 8.4e-37 156.8 94 83.0
RcHm_v2.0_Chr2g0119151 Rosa chinensis HOM05D006928 ORTHO05D008618 1.4e-36 156.0 94 83.0
Sabra16G0195000 Salix brachista HOM05D006928 ORTHO05D008618 1.4e-36 156.0 94 85.1
MD15G1343100 Malus domestica HOM05D006928 ORTHO05D008618 3.2e-36 154.8 94 83.0
COL.COLO4_22417 Corchorus olitorius HOM05D006928 ORTHO05D008618 7.1e-36 153.7 94 84.0
Eucgr.I00245 Eucalyptus grandis HOM05D006928 ORTHO05D008618 1.2e-35 152.9 94 84.0
Prupe.6G162900 Prunus persica HOM05D006928 ORTHO05D008618 1.2e-35 152.9 94 80.9
Gohir.A02G138100 Gossypium hirsutum HOM05D006928 ORTHO05D008618 2.1e-35 152.1 94 81.9
Gohir.D03G048800 Gossypium hirsutum HOM05D006928 ORTHO05D008618 2.1e-35 152.1 94 81.9
Gorai.003G050100 Gossypium raimondii HOM05D006928 ORTHO05D008618 2.1e-35 152.1 94 81.9
Manes.12G150300 Manihot esculenta HOM05D006928 ORTHO05D008618 2.1e-35 152.1 94 83.0
GSVIVG01026587001 Vitis vinifera HOM05D006928 ORTHO05D008618 2.7e-35 151.8 94 80.9
TWI75G0630 Tripterygium wilfordii HOM05D006928 ORTHO05D008618 3.5e-35 151.4 94 83.0
Potri.001G309200 Populus trichocarpa HOM05D006928 ORTHO05D008618 4.6e-35 151.0 94 83.0
Duzib264G0933 Durio zibethinus HOM05D006928 ORTHO05D008618 6.0e-35 150.6 94 80.9
FAN23G1796 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.0e-34 149.8 94 79.8
FAN28G2803 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.0e-34 149.8 94 79.8
Lalb_Chr12g0203321 Lupinus albus HOM05D006928 ORTHO05D008618 1.3e-34 149.4 89 85.4
Dinv09934 Davidia involucrata HOM05D006928 ORTHO05D008618 1.8e-34 149.1 94 79.8
Sed0020530 Sechium edule HOM05D006928 ORTHO05D008618 1.8e-34 149.1 93 77.4
CiPaw.04G083900 Carya illinoinensis HOM05D006928 ORTHO05D008618 2.3e-34 148.7 94 78.7
FvH4_1g23590 Fragaria vesca HOM05D006928 ORTHO05D008618 2.3e-34 148.7 94 78.7
FAN19G2906 Fragaria x ananassa HOM05D006928 ORTHO05D008618 2.3e-34 148.7 94 78.7
PGR119G2472 Punica granatum HOM05D006928 ORTHO05D008618 2.3e-34 148.7 93 79.6
ClCG02G000690 Citrullus lanatus HOM05D006928 ORTHO05D008618 3.0e-34 148.3 93 77.4
Thecc.01G120800 Theobroma cacao HOM05D006928 ORTHO05D008618 3.0e-34 148.3 88 84.1
Duzib187G1761 Durio zibethinus HOM05D006928 ORTHO05D008618 5.1e-34 147.5 94 79.8
CSS0007569 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 6.7e-34 147.1 88 84.1
CSS0018620 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 6.7e-34 147.1 88 84.1
Hund03424 Selenicereus undatus HOM05D006928 ORTHO05D008618 6.7e-34 147.1 89 82.0
Ciclev10026852m.g Citrus clementina HOM05D006928 ORTHO05D008618 1.1e-33 146.4 87 82.8
Cc00_g00790 Coffea canephora HOM05D006928 ORTHO05D008618 1.1e-33 146.4 94 78.7
Cc07_g17360 Coffea canephora HOM05D006928 ORTHO05D008618 1.1e-33 146.4 94 78.7
Actinidia17615 Actinidia chinensis HOM05D006928 ORTHO05D008618 1.9e-33 145.6 94 79.8
CANSAT01G1375 Cannabis sativa HOM05D006928 ORTHO05D008618 1.9e-33 145.6 94 79.8
Atru.chr4.541 Acer truncatum HOM05D006928 ORTHO05D008618 2.5e-33 145.2 94 78.7
CsaV3_2G018080 Cucumis sativus L. HOM05D006928 ORTHO05D008618 2.5e-33 145.2 93 75.3
Aqoxy3G02632 Aquilegia oxysepala HOM05D006928 ORTHO05D008618 4.3e-33 144.4 92 78.3
MBI09_g18622_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 4.3e-33 144.4 94 75.5
MBI09_g20115_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 4.3e-33 144.4 94 75.5
Nn1g06098 Nelumbo nucifera HOM05D006928 ORTHO05D008618 1.3e-32 142.9 93 74.2
Sp6g33580 Schrenkiella parvula HOM05D006928 ORTHO05D008618 1.3e-32 142.9 86 83.7
THA.LOC104799431 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 1.6e-32 142.5 86 83.7
TAR381G0700 Trochodendron aralioides HOM05D006928 ORTHO05D008618 1.6e-32 142.5 89 77.5
AUR62003624 Chenopodium quinoa HOM05D006928 ORTHO05D008618 2.1e-32 142.1 89 79.8
Nitab4.5_0010284g0020 Nicotiana tabacum HOM05D006928 ORTHO05D008618 2.1e-32 142.1 94 76.6
HanXRQChr15g0471661 Helianthus annuus HOM05D006928 ORTHO05D008618 2.8e-32 141.7 94 75.5
THA.LOC104818466 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 4.8e-32 141.0 86 82.6
AL8G42110 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 6.2e-32 140.6 92 76.1
EL10Ac6g15253 Beta vulgaris HOM05D006928 ORTHO05D008618 6.2e-32 140.6 89 78.7
BcaB08g37169 Brassica carinata HOM05D006928 ORTHO05D008618 1.1e-31 139.8 84 84.5
A10p27630 Brassica napus HOM05D006928 ORTHO05D008618 1.1e-31 139.8 84 84.5
C09p67690 Brassica napus HOM05D006928 ORTHO05D008618 1.1e-31 139.8 84 84.5
BolC9t59531H Brassica oleracea HOM05D006928 ORTHO05D008618 1.1e-31 139.8 84 84.5
BraA09t36529Z Brassica rapa HOM05D006928 ORTHO05D008618 1.1e-31 139.8 80 87.5
Medtr8g092690 Medicago truncatula HOM05D006928 ORTHO05D008618 1.1e-31 139.8 73 100.0
ECA238G4197 Erigeron canadensis HOM05D006928 ORTHO05D008618 1.4e-31 139.4 91 79.1
Thhalv10005190m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 1.4e-31 139.4 87 80.5
Aa31LG1G17250 Aethionema arabicum HOM05D006928 ORTHO05D008618 1.8e-31 139.0 85 82.4
BolC9t53907H Brassica oleracea HOM05D006928 ORTHO05D008618 1.8e-31 139.0 89 79.8
DCAR_027258 Daucus carota HOM05D006928 ORTHO05D008618 1.8e-31 139.0 93 80.6
Nitab4.5_0002064g0030 Nicotiana tabacum HOM05D006928 ORTHO05D008618 2.4e-31 138.7 94 74.5
Peaxi162Scf00025g02217 Petunia axillaris HOM05D006928 ORTHO05D008618 2.4e-31 138.7 94 74.5
BcaB04g19985 Brassica carinata HOM05D006928 ORTHO05D008618 3.1e-31 138.3 88 80.7
BraA10t44815Z Brassica rapa HOM05D006928 ORTHO05D008618 3.1e-31 138.3 84 83.3
Thhalv10015138m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 3.1e-31 138.3 86 81.4
Sc16g0003960 Simmondsia chinensis HOM05D006928 ORTHO05D008618 4.0e-31 137.9 93 73.1
Sp2g27750 Schrenkiella parvula HOM05D006928 ORTHO05D008618 5.3e-31 137.5 87 79.3
MSTRG.2691 Avicennia marina HOM05D006928 ORTHO05D008618 9.0e-31 136.7 92 78.3
PSO541G1601 Papaver somniferum HOM05D006928 ORTHO05D008618 9.0e-31 136.7 94 74.5
Solyc11g005360.2 Solanum lycopersicum HOM05D006928 ORTHO05D008618 9.0e-31 136.7 90 76.7
Sopen11g001370 Solanum pennellii HOM05D006928 ORTHO05D008618 9.0e-31 136.7 90 76.7
AT5G09830 Arabidopsis thaliana HOM05D006928 ORTHO05D008618 1.5e-30 136.0 85 81.2
CARHR278670 Cardamine hirsuta HOM05D006928 ORTHO05D008618 2.0e-30 135.6 91 74.7
Migut.H01113 Erythranthe guttata HOM05D006928 ORTHO05D008618 2.6e-30 135.2 96 74.0
Lsat_1_v5_gn_2_66720 Lactuca sativa HOM05D006928 ORTHO05D008618 2.6e-30 135.2 92 76.1
AL6G20240 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 4.5e-30 134.4 85 78.8
Carub.0006s0825 Capsella rubella HOM05D006928 ORTHO05D008618 4.5e-30 134.4 84 79.8
PSO675G6866 Papaver somniferum HOM05D006928 ORTHO05D008618 4.5e-30 134.4 94 73.4
Carub.0008s2549 Capsella rubella HOM05D006928 ORTHO05D008618 9.9e-30 133.3 91 72.5
BcaC04g23298 Brassica carinata HOM05D006928 ORTHO05D008618 8.4e-29 130.2 98 71.4
CDE12G0365 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 8.4e-29 130.2 93 68.8
Haze_25197 Corylus avellana HOM05D006928 ORTHO05D008618 7.1e-28 127.1 159 48.4
Haze_25192 Corylus avellana HOM05D006928 ORTHO05D008618 1.3e-26 122.9 74 81.1
C09p09990 Brassica napus HOM05D006928 ORTHO05D008618 3.0e-26 121.7 92 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3776 Anthoceros agrestis HOM05D006928 ORTHO05D008618 3.9e-26 121.3 89 65.2
Pp3c4_15580 Physcomitrium patens HOM05D006928 ORTHO05D008618 3.9e-26 121.3 94 68.1
HPP92_027450 Vanilla planifolia HOM05D006928 ORTHO05D008618 3.9e-26 121.3 86 69.8
Haze_25196 Corylus avellana HOM05D006928 ORTHO05D008618 5.1e-26 120.9 73 80.8
CDE04G1901 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 8.7e-26 120.2 98 64.3
QL06p051863 Quercus lobata HOM05D006928 ORTHO05D008618 8.7e-26 120.2 75 80.0
SMO351G0462 Selaginella moellendorffii HOM05D006928 ORTHO05D008618 1.9e-25 119.0 94 62.8
Cpa.g.sc1003.1 Carica papaya HOM05D006928 ORTHO05D008618 2.1e-24 115.5 73 79.5
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 2.1e-24 115.5 76 80.3
Actinidia26282 Actinidia chinensis HOM05D006928 ORTHO05D008618 8.2e-24 113.6 72 79.2
TAR376G0498 Trochodendron aralioides HOM05D006928 ORTHO05D008618 8.2e-24 113.6 77 74.0
Mapoly0023s0156 Marchantia polymorpha HOM05D006928 ORTHO05D008618 1.1e-23 113.2 83 65.1
Zm00001eb146740 Zea mays HOM05D006928 ORTHO05D008618 2.4e-23 112.1 93 63.4
CARHR203570 Cardamine hirsuta HOM05D006928 ORTHO05D008618 5.3e-23 110.9 71 78.9
AUR62017933 Chenopodium quinoa HOM05D006928 ORTHO05D008618 1.2e-22 109.8 72 77.8
Ah.03g146570 Amaranthus hybridus HOM05D006928 ORTHO05D008618 2.0e-22 109.0 73 74.0
CAN.G249.11 Capsicum annuum HOM05D006928 ORTHO05D008618 7.6e-22 107.1 73 75.3
SGA_v2.0_scaffold137G35109 Striga asiatica HOM05D006928 ORTHO05D008618 2.2e-21 105.5 76 68.4
BcaB08g37178 Brassica carinata HOM05D006928 ORTHO05D008618 4.9e-21 104.4 84 67.9
unitig_0.g37 Utricularia gibba HOM05D006928 ORTHO05D008618 6.5e-21 104.0 69 72.5
CBR_g19927 Chara braunii HOM05D006928 ORTHO05D008618 3.2e-20 101.7 80 66.2
SalBow1G8150 Salvia bowleyana HOM05D006928 ORTHO05D008618 4.2e-20 101.3 72 68.1
Cre03.g164550 Chlamydomonas reinhardtii HOM05D006928 ORTHO05D008618 4.3e-17 91.3 79 59.5
Os01g0866600 Oryza sativa ssp. japonica HOM05D006928 ORTHO05D008618 6.3e-16 87.4 63 68.3
SEGI_33222 Sequoiadendron giganteum HOM05D006928 ORTHO05D008618 1.4e-15 86.3 108 49.1
Zm00001eb333130 Zea mays HOM05D002854 ORTHO05D003051 2.0e-06 55.8 90 43.3
SalBow3G3879 Salvia bowleyana HOM05D002854 ORTHO05D003051 4.5e-06 54.7 91 40.7


User provided reference genes

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