Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.2e-130 469.9 257 100.0
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.2e-116 422.5 260 92.7
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 7.3e-83 311.2 258 70.9
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 2.1e-77 293.1 257 70.4
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 2.1e-77 293.1 257 70.4
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.1e-77 293.1 274 67.9
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 4.9e-47 192.2 285 49.8
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 7.1e-46 188.3 265 46.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 2.5e-43 179.9 284 46.8
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 3.3e-43 179.5 290 46.6
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 4.3e-43 179.1 260 48.1
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 9.6e-43 177.9 281 48.4
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.2e-42 175.3 265 44.9
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 5.3e-33 145.6 259 41.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.5e-32 142.5 287 39.0
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.9e-32 142.1 290 38.3
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.2e-29 134.4 294 37.8
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.1e-29 133.7 286 37.1
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 7.9e-29 131.7 273 36.6
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.8e-28 130.6 267 39.3
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.1e-28 129.0 273 36.3
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 5.7e-27 125.6 293 35.2
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 5.7e-27 125.6 291 37.5
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 7.4e-27 125.2 285 35.8
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.8e-26 123.2 283 37.5
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 6.3e-26 122.1 297 35.0
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.1e-25 121.3 291 35.4
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 4.1e-25 119.4 298 34.6
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.5e-24 117.5 288 37.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.0e-24 117.1 267 39.7
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 2.6e-24 116.7 287 35.2
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 3.4e-24 116.3 268 34.3
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 3.4e-24 116.3 268 34.3
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.0e-23 114.8 287 35.5
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.3e-23 114.4 296 33.4
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.3e-23 114.4 290 35.9
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-23 114.0 275 33.1
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.7e-23 114.0 262 38.9
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.8e-23 112.8 280 33.9
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 5.0e-23 112.5 262 38.5
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.5e-23 112.1 290 34.5
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 8.5e-23 111.7 302 31.8
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 8.5e-23 111.7 292 34.6
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.4e-22 110.9 275 34.9
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 4.2e-22 109.4 289 32.9
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 9.4e-22 108.2 292 33.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.1e-21 107.1 321 32.4
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 2.1e-21 107.1 282 31.6
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 2.7e-21 106.7 312 31.4
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 6.1e-21 105.5 276 34.1
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 7.9e-21 105.1 269 35.3
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.0e-20 104.8 291 34.0
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-20 104.4 283 33.2
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-20 104.0 263 35.0
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 3.0e-20 103.2 281 31.7
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 5.1e-20 102.4 291 33.0
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 5.1e-20 102.4 280 31.8
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.7e-20 102.1 268 31.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.7e-20 102.1 285 30.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 8.8e-20 101.7 261 33.7
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.6e-19 100.1 280 32.1
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.3e-19 99.8 286 30.8
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 4.4e-19 99.4 276 30.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.4e-19 99.4 257 33.9
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.4e-19 99.4 290 34.1
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.4e-19 98.6 272 30.5
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.3e-18 97.8 280 34.6
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 2.2e-18 97.1 269 30.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 3.7e-18 96.3 253 32.4
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.7e-18 96.3 280 30.7
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 4.8e-18 95.9 289 30.4
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 8.2e-18 95.1 264 30.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.4e-17 94.4 275 32.0
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.4e-17 94.4 270 32.6
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.8e-17 94.0 279 28.3
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.1e-17 93.2 292 29.8
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.1e-17 92.8 290 29.3
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.2e-16 91.3 262 31.3
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.5e-16 90.9 289 29.4
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.5e-16 90.9 280 31.8
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.6e-16 90.1 273 31.5
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 3.4e-16 89.7 288 30.2
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 4.5e-16 89.4 221 34.4
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 4.5e-16 89.4 266 30.1
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 5.9e-16 89.0 224 33.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 5.9e-16 89.0 266 30.8
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 7.7e-16 88.6 262 30.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.0e-15 88.2 269 31.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.0e-15 88.2 271 29.9
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.7e-15 87.4 276 29.0
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.7e-15 87.4 267 31.8
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.2e-15 87.0 285 29.1
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 6.5e-15 85.5 289 30.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.1e-14 84.7 278 32.0
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 7.2e-14 82.0 304 31.9
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 9.4e-14 81.6 125 39.2
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.6e-13 80.9 287 29.3
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.6e-13 80.9 289 30.8
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.6e-13 80.9 265 32.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 2.1e-13 80.5 127 39.4
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 3.6e-13 79.7 221 33.0
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 6.1e-13 79.0 125 37.6
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 6.1e-13 79.0 152 32.9
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.9e-13 78.6 255 30.2
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.0e-12 78.2 211 30.8
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.0e-12 78.2 246 28.5
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.0e-12 78.2 252 28.2
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-12 77.8 254 29.1
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.8e-12 77.4 261 28.4
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.3e-12 77.0 285 27.4
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 5.2e-12 75.9 202 30.2
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 6.7e-12 75.5 235 28.9
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.5e-11 74.3 253 28.1
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.5e-11 74.3 309 26.2
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.0e-11 73.9 189 30.2
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.6e-11 73.6 326 27.3
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 2.6e-11 73.6 209 29.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 2.6e-11 73.6 199 31.7
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 3.3e-11 73.2 230 28.3
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.3e-11 73.2 311 27.7
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.3e-11 73.2 226 30.1
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.4e-11 72.8 269 29.4
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.4e-11 72.8 292 27.4
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 5.7e-11 72.4 253 26.5
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.7e-11 72.4 189 29.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 7.4e-11 72.0 287 30.0
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 9.7e-11 71.6 299 26.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.3e-10 71.2 253 26.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-10 71.2 298 26.2
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.7e-10 70.9 159 35.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 2.8e-10 70.1 257 29.6
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.8e-10 70.1 159 36.5
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.7e-10 69.7 255 27.5
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.7e-10 69.7 295 26.1
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 6.3e-10 68.9 275 28.0
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 8.2e-10 68.6 185 30.3
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 8.2e-10 68.6 122 33.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.1e-09 68.2 187 28.9
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.1e-09 68.2 265 27.2
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.1e-09 68.2 252 27.8
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.1e-09 68.2 271 28.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.4e-09 67.8 264 29.9
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.8e-09 67.4 269 27.9
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 2.4e-09 67.0 291 24.1
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.1e-09 66.6 257 25.3
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 4.1e-09 66.2 250 26.8
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 4.1e-09 66.2 244 27.0
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.1e-09 66.2 261 28.0
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 4.1e-09 66.2 268 26.1
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 5.3e-09 65.9 253 27.3
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 5.3e-09 65.9 292 26.0
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 9.1e-09 65.1 303 25.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.2e-08 64.7 273 25.6
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.2e-08 64.7 266 25.9
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.6e-08 64.3 287 25.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.6e-08 63.5 300 28.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.5e-08 63.2 268 25.7
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 4.5e-08 62.8 278 25.9
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 5.9e-08 62.4 257 26.5
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 5.9e-08 62.4 258 26.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.0e-07 61.6 247 25.5
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.0e-07 61.6 131 29.0
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.0e-07 61.6 276 25.4
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.3e-07 61.2 150 30.7
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.7e-07 60.8 258 26.4
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.7e-07 60.8 262 26.7
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 2.9e-07 60.1 283 23.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 5.0e-07 59.3 241 27.4
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-06 58.2 299 25.1
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.5e-06 57.8 240 26.2
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.9e-06 57.4 117 32.5
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 2.5e-06 57.0 107 40.2
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 4.2e-06 56.2 322 23.6
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.2e-06 56.2 189 30.7


User provided reference genes

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