Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 5.9e-147 524.2 277 100.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 4.9e-125 451.4 272 81.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.3e-122 443.4 270 80.7
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 5.6e-121 438.0 253 85.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.6e-121 438.0 277 78.3
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 7.5e-118 427.6 277 77.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 4.9e-117 424.9 278 77.0
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.7e-114 416.4 264 77.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.3e-114 416.0 277 75.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.4e-110 401.7 252 80.6
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.4e-108 396.7 271 74.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 2.3e-106 389.4 271 71.2
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.5e-105 386.0 269 71.0
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.8e-104 382.5 263 72.6
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.1e-103 380.6 271 70.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 4.0e-103 378.6 277 75.1
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.4e-102 375.6 253 72.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.4e-102 375.6 273 69.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.9e-101 372.5 270 69.6
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.7e-101 372.1 254 72.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 6.4e-101 371.3 274 68.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.4e-100 370.2 255 72.2
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.9e-100 369.8 252 73.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 7.1e-100 367.9 252 71.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 7.1e-100 367.9 272 68.0
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 6.0e-99 364.8 272 67.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.0e-99 364.8 273 67.4
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 7.8e-99 364.4 272 68.4
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-98 363.6 269 69.5
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-98 363.6 254 70.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.7e-98 363.2 252 69.8
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.3e-98 362.8 252 69.8
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.0e-98 362.5 273 67.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.0e-98 362.5 250 72.8
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.9e-98 362.1 239 75.7
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.1e-98 361.7 249 72.3
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 5.1e-98 361.7 254 69.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.6e-98 361.3 271 67.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 8.6e-98 360.9 252 69.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 8.6e-98 360.9 252 69.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 7.3e-97 357.8 254 68.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.2e-96 357.1 254 68.1
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.2e-96 357.1 250 70.0
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 2.1e-96 356.3 276 67.8
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.8e-96 355.9 269 66.5
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.6e-96 355.5 254 67.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 6.2e-96 354.8 245 71.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 6.2e-96 354.8 257 70.0
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.1e-95 354.0 254 67.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-95 353.2 261 66.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.4e-95 352.8 267 67.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.4e-95 352.8 270 66.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.0e-95 352.1 251 69.3
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 5.2e-95 351.7 275 64.0
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 5.2e-95 351.7 261 66.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 5.2e-95 351.7 261 66.3
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.5e-94 350.1 253 67.2
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.5e-94 350.1 253 67.2
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 4.4e-94 348.6 251 67.7
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.3e-93 347.1 261 65.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 8.4e-93 344.4 272 64.7
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.1e-92 344.0 270 63.7
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.2e-92 342.4 242 69.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.2e-91 340.5 270 63.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.2e-91 340.5 271 63.5
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.6e-91 340.1 315 58.7
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 3.5e-91 339.0 290 62.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.6e-91 338.6 247 66.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 6.0e-91 338.2 252 65.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.3e-90 336.3 254 65.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 5.1e-90 335.1 268 62.7
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.1e-89 334.0 254 65.0
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.9e-89 333.2 275 61.8
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-89 332.8 247 67.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.6e-89 331.6 251 67.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 5.6e-89 331.6 251 67.3
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 7.3e-89 331.3 272 62.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.6e-88 330.1 249 65.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.8e-88 328.6 265 63.8
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 4.8e-88 328.6 248 65.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.0e-87 325.5 248 64.1
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 5.3e-87 325.1 238 66.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 5.4e-84 315.1 249 64.7
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.1e-84 314.7 265 61.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 6.0e-83 311.6 250 64.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.6e-81 305.1 215 71.6
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.6e-80 302.4 252 60.7
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.4e-79 300.4 273 58.2
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.6e-78 296.2 252 59.5
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 6.4e-77 291.6 267 56.2
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.4e-77 291.2 275 58.5
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.6e-75 285.4 206 69.4
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 4.6e-75 285.4 268 59.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 3.0e-74 282.7 270 60.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.9e-73 280.0 292 56.5
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.5e-73 279.6 263 60.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.3e-73 278.9 292 56.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.3e-73 278.9 272 55.9
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.6e-72 276.9 238 60.9
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.2e-70 270.8 252 56.0
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.9e-69 265.4 265 57.7
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.9e-68 263.5 255 61.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 7.1e-68 261.5 169 72.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.7e-67 259.6 251 57.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.0e-67 258.5 191 64.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.5e-65 253.1 266 55.3
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.5e-62 243.8 257 49.8
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.0e-53 214.5 165 64.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.9e-51 204.9 292 47.6
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.0e-50 203.0 156 64.1
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.3e-47 192.2 173 59.0
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.9e-44 183.7 212 53.3
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.4e-44 181.4 241 44.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.5e-36 157.5 202 48.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.9e-36 157.1 255 36.9
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-33 147.5 157 52.2
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 7.5e-33 145.2 248 37.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 9.1e-31 138.3 85 75.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.7e-30 135.2 128 56.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-28 130.2 96 65.6
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.2e-28 128.6 118 56.8
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 5.7e-25 119.0 79 69.6
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-24 116.3 131 48.9
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 3.2e-20 103.2 66 78.8
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.8e-19 100.1 87 57.5
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-17 94.7 86 58.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-14 84.7 71 59.2
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 4.7e-11 72.8 68 52.9
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.1e-11 72.4 39 82.1
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.8e-10 70.9 166 31.3
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-08 64.7 57 59.6
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 4.9e-08 62.8 57 54.4
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-06 57.8 42 64.3


User provided reference genes

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