Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 4.0e-171 604.7 324 100.0
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 4.2e-160 568.2 319 96.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 8.2e-148 527.3 305 92.5
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.8e-147 526.2 301 93.7
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.3e-142 510.0 305 90.5
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 3.9e-142 508.4 302 90.4
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.6e-140 503.1 298 90.9
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.6e-135 486.5 305 86.2
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.7e-132 476.5 306 85.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 2.2e-132 476.1 305 83.6
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 6.3e-132 474.6 311 83.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.3e-129 466.8 305 82.0
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.7e-129 466.5 302 81.8
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 6.5e-129 464.5 302 81.1
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.2e-128 461.8 305 81.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 7.2e-128 461.1 305 80.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.2e-128 461.1 301 81.4
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.2e-128 461.1 301 81.4
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.7e-127 459.1 298 82.2
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.1e-127 458.0 295 83.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.8e-126 456.4 294 83.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.3e-126 456.1 297 82.2
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.7e-124 449.9 306 80.7
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.2e-124 449.5 290 83.1
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.2e-124 449.5 295 81.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 3.7e-124 448.7 307 78.5
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 8.2e-124 447.6 306 79.4
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 3.1e-123 445.7 306 79.4
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.6e-122 442.6 297 81.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 3.5e-122 442.2 306 78.4
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.5e-122 442.2 305 77.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.5e-122 441.8 305 77.7
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 5.9e-122 441.4 308 76.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.9e-121 439.1 305 77.4
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.9e-121 439.1 297 78.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 6.5e-121 438.0 298 77.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 8.5e-121 437.6 292 79.8
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 4.2e-120 435.3 292 79.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 9.4e-120 434.1 317 76.0
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 2.7e-119 432.6 295 79.0
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 4.7e-119 431.8 291 80.1
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 4.7e-119 431.8 295 76.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.0e-118 430.6 305 77.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.0e-118 430.6 302 76.5
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.0e-118 430.6 296 78.4
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.4e-118 430.3 310 77.4
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.3e-118 429.5 312 76.9
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 3.0e-118 429.1 311 76.8
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.6e-117 426.0 310 76.1
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.4e-117 424.5 305 74.8
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.4e-117 424.5 305 74.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.3e-116 423.7 307 75.9
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.2e-116 422.9 305 72.8
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.2e-116 422.9 294 75.5
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.2e-116 422.9 292 77.4
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.3e-116 421.4 291 78.4
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.3e-116 421.4 305 76.4
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.1e-115 420.6 289 78.5
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 3.1e-115 419.1 292 76.7
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.1e-115 419.1 296 77.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 4.1e-115 418.7 290 77.2
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 4.1e-115 418.7 290 77.2
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.1e-115 417.5 297 75.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.2e-114 417.2 306 76.1
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.2e-114 417.2 299 74.6
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.6e-114 416.8 305 71.8
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.0e-114 416.4 306 75.5
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.6e-114 416.0 307 74.9
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 3.5e-114 415.6 305 71.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.5e-114 415.6 305 71.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.5e-114 415.6 305 71.8
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.0e-113 414.1 305 71.1
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.7e-113 413.3 305 71.5
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.7e-113 413.3 297 74.4
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.2e-113 412.9 299 74.6
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 5.0e-113 411.8 297 74.4
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 5.0e-113 411.8 297 73.7
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.5e-113 411.4 299 73.2
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.1e-112 410.6 305 71.1
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.5e-112 410.2 297 73.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.5e-112 409.5 305 74.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.6e-111 406.8 292 74.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 6.1e-111 404.8 301 73.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.2e-109 400.6 292 73.3
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.0e-109 399.8 305 71.8
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.0e-109 399.8 281 77.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.8e-108 395.2 281 77.2
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 6.3e-108 394.8 291 72.9
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 3.1e-107 392.5 295 71.2
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.0e-106 389.8 307 69.1
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 4.5e-106 388.7 305 70.2
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.0e-105 387.5 281 75.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 6.5e-105 384.8 297 70.4
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-103 380.6 296 70.6
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-103 380.6 237 88.6
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.6e-103 379.0 281 74.7
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.3e-102 376.3 299 66.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 4.0e-102 375.6 306 66.3
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.5e-101 373.6 298 64.8
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 4.4e-101 372.1 297 68.0
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 7.0e-99 364.8 296 68.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.6e-97 358.2 295 65.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.2e-96 355.5 299 63.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.0e-94 350.9 290 64.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.6e-93 346.3 292 68.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 5.4e-91 338.6 281 64.8
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.6e-88 328.6 195 91.3
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 7.3e-88 328.2 286 65.0
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.1e-78 297.7 296 59.8
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 4.0e-78 295.8 306 54.6
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.6e-72 275.4 193 76.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.6e-66 255.8 163 83.4
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 8.1e-63 245.0 299 48.2
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.1e-62 244.6 139 93.5
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-62 244.6 245 63.7
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 3.4e-61 239.6 159 81.1
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.0e-57 226.5 195 63.6
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.5e-56 223.4 295 48.1
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 5.3e-54 215.7 291 48.5
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.3e-54 215.7 338 42.6
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.4e-53 213.0 191 59.7
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 8.1e-47 191.8 115 90.4
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.8e-46 190.7 143 71.3
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 5.8e-45 185.7 186 60.8
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.5e-37 161.0 212 46.2
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 2.6e-37 160.2 112 75.9
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 3.0e-33 146.7 182 45.6
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 8.2e-31 138.7 100 70.0
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-30 137.9 97 77.3
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 5.3e-30 136.0 169 49.1
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.3e-23 112.5 86 70.9
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.7e-20 104.4 108 60.2
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.0e-17 95.1 60 78.3
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 5.1e-17 92.8 303 28.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.5e-16 90.5 150 42.7
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.8e-15 87.0 282 28.4
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 4.1e-14 83.2 46 80.4
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 5.3e-14 82.8 55 70.9
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 8.5e-12 75.5 172 34.9
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 7.4e-08 62.4 57 63.2


User provided reference genes

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