Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.1e-101 373.2 179 100.0
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 4.2e-85 318.2 160 94.4
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.2e-84 316.6 160 93.8
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.2e-84 316.6 160 93.1
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 4.6e-84 314.7 160 91.2
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 6.0e-84 314.3 160 91.2
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.8e-84 313.9 160 92.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.0e-83 313.5 165 89.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.5e-82 309.7 164 88.4
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 7.3e-82 307.4 164 88.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 4.8e-81 304.7 160 90.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.2e-81 304.3 164 86.6
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.1e-80 303.5 160 88.1
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.4e-80 302.4 164 85.4
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 3.1e-80 302.0 164 86.6
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.1e-80 302.0 164 86.6
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.1e-80 302.0 164 86.6
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 3.1e-80 302.0 164 87.2
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.0e-80 301.6 164 86.0
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 5.3e-80 301.2 164 86.6
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 6.9e-80 300.8 164 86.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 9.0e-80 300.4 164 86.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 9.0e-80 300.4 164 85.4
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 9.0e-80 300.4 160 86.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.2e-79 300.1 164 84.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.2e-79 300.1 163 85.9
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-79 300.1 164 85.4
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.5e-79 299.7 164 84.1
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.5e-79 299.7 164 84.8
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.5e-79 299.7 164 86.0
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.0e-79 299.3 162 85.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.0e-79 299.3 164 84.1
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-79 298.9 164 86.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.6e-79 298.9 164 85.4
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.6e-79 298.9 162 84.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.4e-79 298.5 164 86.0
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 4.4e-79 298.1 164 83.5
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 4.4e-79 298.1 164 86.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.8e-79 297.7 164 84.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.6e-79 297.4 164 84.1
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 9.9e-79 297.0 162 85.8
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.3e-78 296.6 164 83.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.3e-78 296.6 164 84.1
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.2e-78 295.8 164 83.5
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.2e-78 295.8 164 84.1
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.2e-78 295.8 164 85.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.9e-78 295.4 163 86.5
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.9e-78 295.4 164 86.0
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.9e-78 295.4 164 84.8
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.9e-78 294.7 164 82.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 8.4e-78 293.9 163 81.6
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.1e-77 293.5 164 82.9
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.1e-77 293.5 164 84.1
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.1e-77 293.5 161 85.1
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.1e-77 293.5 164 84.1
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.4e-77 293.1 164 85.4
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.9e-77 292.7 164 85.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.9e-77 292.7 164 85.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 2.4e-77 292.4 163 81.0
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.2e-77 292.0 164 84.8
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.2e-77 292.0 163 85.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.2e-77 292.0 164 83.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.2e-77 292.0 164 82.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.2e-77 292.0 162 84.6
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 3.2e-77 292.0 163 85.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.2e-77 291.6 164 84.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 4.2e-77 291.6 164 84.8
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-77 291.6 164 81.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-77 291.6 164 81.7
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.2e-77 291.6 164 84.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.2e-77 291.6 162 84.6
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.4e-77 291.2 164 84.8
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 5.4e-77 291.2 164 82.3
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.1e-77 290.8 163 84.7
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 7.1e-77 290.8 164 83.5
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.3e-77 290.4 160 85.0
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.2e-76 290.0 163 80.4
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.6e-76 289.7 163 84.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.6e-76 289.7 164 82.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 2.1e-76 289.3 164 82.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.1e-76 289.3 159 81.8
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.5e-76 288.5 160 82.5
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.6e-76 288.1 164 82.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.6e-76 288.1 164 82.3
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 4.6e-76 288.1 164 82.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.0e-75 287.0 163 80.4
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.0e-75 287.0 162 82.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.7e-75 286.2 164 81.7
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.3e-75 285.8 164 82.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.3e-75 285.8 164 81.1
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.3e-74 282.0 164 77.4
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 5.6e-74 281.2 161 79.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 7.3e-74 280.8 158 85.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 9.6e-74 280.4 208 67.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.3e-73 280.0 162 82.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.6e-73 279.6 164 79.3
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-73 278.5 164 80.5
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 4.8e-73 278.1 156 84.0
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.1e-73 277.3 149 85.2
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 4.5e-71 271.6 164 76.2
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.3e-70 270.0 148 82.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.2e-70 269.2 164 76.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.4e-69 264.6 156 78.8
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.7e-68 262.3 256 55.5
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.7e-68 262.3 164 73.2
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.9e-68 260.8 162 74.7
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-67 259.6 162 74.1
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 3.9e-67 258.5 164 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 8.7e-67 257.3 161 73.3
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.9e-66 256.1 158 72.8
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-66 255.8 158 72.8
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.5e-66 255.8 218 60.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 4.3e-66 255.0 158 72.8
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 3.7e-65 251.9 158 72.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.8e-65 251.5 164 68.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.2e-65 251.1 139 85.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.3e-64 248.1 158 70.9
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 5.3e-64 248.1 161 70.2
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 4.5e-63 245.0 155 71.6
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 7.6e-63 244.2 164 69.5
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-55 220.3 153 65.4
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.2e-54 216.1 149 72.5
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.7e-49 198.7 182 53.3
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 6.3e-49 198.0 173 60.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 8.8e-43 177.6 158 54.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.5e-39 165.2 93 83.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.0e-38 164.1 105 77.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.2e-37 158.7 89 84.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 6.3e-33 144.8 75 88.0
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.8e-32 143.3 109 64.2
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.5e-29 133.7 79 77.2
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.0e-27 125.9 75 76.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 8.8e-27 124.4 70 77.1
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.7e-20 102.8 77 63.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.5e-18 97.1 62 69.4
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.4e-18 95.9 49 93.9
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 5.0e-14 82.0 52 75.0
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.8e-11 73.6 74 50.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.7e-10 68.6 50 62.0
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.7e-07 58.2 43 58.1


User provided reference genes

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