Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 0.0e+00 1218.4 676 100.0
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 0.0e+00 1167.5 659 96.8
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 0.0e+00 1086.2 660 90.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.2e-306 1053.9 657 88.3
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 4.9e-296 1020.8 657 85.2
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 2.4e-295 1018.5 658 85.3
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.3e-293 1012.7 657 85.5
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.1e-292 1009.6 658 84.5
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-292 1009.2 705 79.6
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 3.6e-291 1004.6 657 84.9
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.7e-291 1004.2 705 79.1
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 9.9e-289 996.5 660 82.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.9e-288 994.2 660 82.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.1e-286 988.8 659 81.9
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 5.1e-285 984.2 660 83.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.1e-284 983.0 656 82.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.5e-284 981.9 660 82.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.6e-284 979.9 660 81.1
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.1e-283 978.8 660 82.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 8.1e-283 976.9 658 81.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-281 972.6 660 81.1
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.4e-281 971.5 658 81.3
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.5e-281 971.1 658 81.5
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.9e-280 968.4 660 81.4
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 8.4e-280 966.8 660 81.5
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.4e-279 966.1 660 80.5
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 2.4e-279 965.3 655 80.5
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.2e-279 964.9 660 80.8
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 3.2e-279 964.9 657 82.0
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 9.3e-279 963.4 660 81.4
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 2.7e-278 961.8 660 81.2
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.7e-278 961.8 660 81.1
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 6.0e-278 960.7 660 80.2
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.0e-277 959.9 660 80.6
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.3e-277 959.5 660 79.7
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 8.7e-277 956.8 660 80.2
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 5.6e-276 954.1 660 79.2
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.3e-275 953.0 660 79.8
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.3e-275 953.0 661 79.0
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.3e-275 953.0 660 80.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.8e-275 951.8 719 74.3
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.7e-275 951.4 719 74.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.8e-275 951.0 655 78.9
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 6.2e-275 950.7 660 81.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.0e-274 948.0 660 79.4
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 4.0e-274 948.0 660 80.2
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 6.9e-274 947.2 660 78.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.2e-273 946.4 660 80.0
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.0e-273 945.7 661 77.9
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 3.4e-273 944.9 660 79.4
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.5e-273 944.5 660 78.5
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.2e-272 942.2 639 80.6
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.9e-272 941.8 640 80.5
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.9e-272 941.8 661 78.5
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.8e-272 941.4 660 80.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 4.9e-272 941.0 660 79.2
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.1e-271 939.9 660 79.8
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.1e-271 939.9 659 77.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.1e-271 939.9 662 78.9
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 2.5e-271 938.7 639 80.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 6.0e-270 934.1 660 78.2
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.0e-269 933.3 660 78.5
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 6.7e-269 930.6 656 77.3
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 8.7e-269 930.2 660 78.0
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.5e-268 928.7 660 78.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.5e-268 928.7 660 79.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 7.4e-268 927.2 660 78.2
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.4e-266 922.9 660 77.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.0e-265 919.1 660 78.3
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.6e-265 918.7 660 78.2
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.6e-265 918.7 660 78.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 7.6e-265 917.1 660 78.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.1e-263 913.3 654 78.0
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 5.5e-263 911.0 660 76.5
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.1e-262 909.1 660 78.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 6.0e-262 907.5 660 78.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 6.0e-262 907.5 660 78.5
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 3.9e-261 904.8 660 77.1
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.5e-260 902.1 660 77.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.5e-260 902.1 660 77.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.2e-259 899.0 656 76.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.7e-259 898.3 709 72.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.8e-259 897.9 668 76.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.8e-258 896.0 658 76.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.1e-258 894.8 660 76.1
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 6.9e-258 894.0 663 75.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.5e-257 892.9 659 75.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.2e-255 884.8 657 77.6
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 4.6e-254 881.3 656 74.7
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.5e-252 875.5 659 76.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 9.7e-252 873.6 522 94.3
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 4.8e-251 871.3 656 73.3
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 6.3e-251 870.9 656 74.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.4e-249 865.1 707 70.4
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 3.9e-245 851.7 660 73.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.2e-243 844.0 660 73.9
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.6e-241 839.0 734 65.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 4.5e-241 838.2 1010 53.6
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.8e-240 835.1 646 74.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.2e-239 832.0 659 74.1
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 9.4e-239 830.5 611 76.4
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.7e-238 828.9 648 72.4
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 3.9e-237 825.1 662 71.0
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.0e-236 822.8 660 71.8
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-235 820.1 693 68.5
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 2.4e-234 815.8 623 73.7
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.2e-233 813.5 549 82.5
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.7e-230 801.6 660 69.2
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.8e-229 799.7 655 69.0
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 9.7e-228 793.9 597 75.5
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-227 790.8 712 65.6
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 5.3e-226 788.1 640 69.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.0e-225 786.2 640 69.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.1e-210 735.3 656 64.5
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 5.4e-210 734.9 707 62.9
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.6e-206 723.4 638 64.1
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.0e-201 704.9 642 62.5
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 8.0e-198 694.5 640 62.7
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 6.9e-157 558.5 675 51.0
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 6.0e-153 545.4 394 77.7
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.5e-147 525.4 372 76.6
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.1e-145 520.4 370 78.1
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.9e-129 465.3 346 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 7.5e-119 432.2 562 49.1
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 6.3e-102 375.9 422 57.1
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 8.3e-86 322.4 471 48.2
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 8.6e-83 312.4 487 47.2
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 8.6e-75 285.8 692 32.8
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.1e-69 266.2 245 65.7
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.1e-50 205.7 185 64.3
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.6e-49 200.7 285 48.1
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.3e-42 177.6 535 32.3
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-40 172.6 97 89.7
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 2.9e-38 164.5 97 85.6
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.8e-38 164.1 94 87.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.2e-37 160.6 128 68.8
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.6e-31 141.4 603 26.0
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.2e-25 119.8 92 73.9
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.7e-22 112.1 663 23.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.1e-19 100.5 71 74.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.1e-16 92.8 689 23.1
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.1e-16 91.3 109 56.0
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 4.5e-15 87.4 49 87.8
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.3e-14 85.9 82 64.6
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 8.8e-11 73.2 82 59.8


User provided reference genes

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