Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1780.8 891 100.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1699.1 913 93.0
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 913 93.5
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 913 91.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 913 90.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 951 85.5
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 914 88.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1609.3 914 87.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 913 87.5
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1565.1 914 85.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1551.6 914 83.2
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1546.6 914 83.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1542.3 914 82.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1542.3 914 82.5
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1540.4 914 82.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1540.4 914 82.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1536.9 914 82.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1535.0 914 81.7
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1534.2 914 82.6
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1531.9 914 81.8
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1531.5 914 82.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1530.4 914 82.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1529.2 936 81.2
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1528.8 914 82.1
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1526.5 914 82.1
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 914 81.8
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 914 81.9
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 932 81.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1519.6 914 81.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1515.7 914 82.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1515.4 914 81.8
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1513.0 914 81.1
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1510.4 914 80.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1509.6 914 80.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1509.2 914 80.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1502.6 928 80.0
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1501.5 914 80.1
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1499.2 913 80.4
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1497.6 914 80.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1497.6 914 80.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1497.3 914 80.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1493.4 914 79.4
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1491.9 914 79.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1490.7 951 78.7
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1489.9 914 80.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1487.2 914 79.6
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1486.1 914 79.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1485.7 962 76.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1479.9 915 79.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1479.9 914 78.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1478.8 914 79.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1476.8 914 79.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1475.3 914 79.1
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1473.8 894 80.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1473.0 928 78.1
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1471.8 914 78.6
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 914 78.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1470.3 914 78.8
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1469.5 1013 73.0
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1469.5 914 78.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1468.4 914 78.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1462.6 914 77.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1456.8 914 77.2
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1453.0 914 78.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1452.2 914 76.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1450.3 914 77.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1449.5 914 77.0
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1449.1 914 77.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1448.7 914 77.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1448.3 914 76.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1446.8 912 76.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1446.8 914 76.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1446.4 914 77.4
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1446.0 914 76.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1444.1 914 76.6
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1442.9 914 76.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1442.9 914 76.8
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1441.8 938 76.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1440.6 914 76.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1438.3 802 89.0
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1438.3 914 76.5
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1437.6 920 76.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1437.6 914 76.9
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1437.2 919 76.3
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1436.8 914 76.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1436.4 914 76.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1435.6 914 76.6
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1434.9 919 76.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1433.7 914 76.4
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 914 76.4
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 914 76.0
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 863 81.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1431.8 916 76.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1431.0 929 75.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1431.0 914 77.5
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 914 76.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1420.6 908 77.0
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1419.8 914 75.6
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1419.1 929 74.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 920 75.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 940 73.9
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1402.1 979 70.8
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1400.6 1003 71.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1399.4 1029 69.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1396.7 913 75.4
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1390.9 910 75.7
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1377.8 943 72.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1375.5 936 72.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1359.0 914 73.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1355.1 914 75.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1303.9 944 70.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1277.7 914 67.5
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1266.1 842 74.2
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1253.8 924 66.9
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1243.8 914 66.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1173.3 934 66.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1171.0 934 66.3
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1166.8 749 77.6
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1161.7 894 63.6
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1125.2 723 76.2
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1084.7 915 61.1
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.6e-305 1050.4 740 70.8
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.0e-288 996.9 938 53.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 4.2e-287 991.5 664 73.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.2e-286 989.9 904 53.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-280 969.1 579 82.2
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 5.5e-279 964.5 881 57.8
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.2e-275 952.6 919 52.4
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.7e-262 908.3 778 58.4
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-257 892.9 597 74.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 5.4e-218 761.9 720 56.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.0e-213 745.7 647 59.4
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.6e-212 743.0 904 43.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.6e-212 741.5 672 56.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 6.0e-209 731.9 510 70.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 7.8e-209 731.5 755 51.5
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-172 610.5 533 61.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.0e-171 608.2 408 73.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 7.9e-161 572.0 347 83.9
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.2e-152 542.7 394 65.2
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 6.3e-150 535.8 404 66.8
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.3e-142 509.2 295 83.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-135 488.4 398 62.3
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.0e-131 473.0 310 74.5
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.5e-127 461.5 330 67.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 5.0e-115 419.9 255 78.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.9e-109 401.4 303 69.0
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.2e-108 398.7 332 64.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.4e-101 374.4 228 79.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.7e-84 317.8 888 27.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.6e-82 310.1 890 26.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-81 308.1 904 28.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.5e-74 284.6 889 26.2
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.1e-66 259.2 239 56.9
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-59 235.3 222 52.7
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.8e-57 227.3 877 23.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.1e-56 224.2 332 38.0
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-54 217.6 311 44.1
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.5e-54 216.9 140 73.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.2e-47 196.1 124 79.8
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 3.6e-44 184.5 217 51.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.5e-42 179.1 144 63.2
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.7e-42 177.2 113 76.1
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 5.5e-37 160.6 125 66.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.8e-35 155.6 149 55.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.4e-32 146.0 446 27.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.8e-26 123.2 233 35.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.2e-25 122.1 112 53.6
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 7.7e-23 113.6 299 26.4
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.3e-22 112.8 420 24.8
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.3e-17 96.3 83 59.0
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.5e-15 88.2 61 62.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 7.7e-15 87.0 49 77.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.5e-10 72.8 56 58.9
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.3e-09 69.7 48 64.6
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.9e-09 67.8 36 88.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.1e-08 66.6 55 56.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.8e-08 65.9 94 36.2
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-06 60.1 77 42.9


User provided reference genes

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