Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21602 Trifolium pratense HOM05D008291 ORTHO05D003568 3.0e-78 295.0 144 100.0
Lj1g0021760 Lotus japonicus HOM05D008291 ORTHO05D003568 1.4e-38 163.3 116 65.5
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 3.7e-36 155.2 115 60.9
Medtr0009s0330 Medicago truncatula HOM05D008291 ORTHO05D003568 2.5e-32 142.5 115 60.9
Ca_17856_v3 Cicer arietinum L. HOM05D008291 ORTHO05D003568 3.2e-27 125.6 116 50.0
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 7.1e-27 124.4 116 48.3
Sopen09g001250 Solanum pennellii HOM05D008291 ORTHO05D000669 1.6e-26 123.2 117 47.0
Solyc12g082720.1 Solanum lycopersicum HOM05D008291 ORTHO05D003568 2.1e-26 122.9 117 47.9
Solyc12g038430.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 3.5e-26 122.1 117 47.0
Sopen09g022380 Solanum pennellii HOM05D008291 ORTHO05D000669 3.5e-26 122.1 117 46.2
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 4.6e-26 121.7 117 46.2
TPR.G11385 Trifolium pratense HOM05D008291 ORTHO05D003568 1.7e-25 119.8 95 63.2
Glyma.05G165700 Glycine max HOM05D008291 ORTHO05D000669 5.6e-24 114.8 116 44.8
Glyma.08G123400 Glycine max HOM05D008291 ORTHO05D000669 2.8e-23 112.5 116 44.0
VMungo0251G2604 Vigna mungo HOM05D008291 ORTHO05D003568 3.6e-23 112.1 116 41.4
Lj4g0027394 Lotus japonicus HOM05D008291 ORTHO05D003568 6.9e-22 107.8 116 41.4
Phvul.002G246000 Phaseolus vulgaris HOM05D008291 ORTHO05D003568 1.2e-21 107.1 116 41.4
Lj2g0007253 Lotus japonicus HOM05D008291 ORTHO05D003568 2.6e-21 105.9 102 54.9
arahy.Tifrunner.gnm1.ann1.EW3BSR Arachis hypogaea HOM05D008291 ORTHO05D000669 3.8e-20 102.1 126 38.9
arahy.Tifrunner.gnm1.ann1.TSWN09 Arachis hypogaea HOM05D008291 ORTHO05D000669 3.8e-20 102.1 126 38.9
Sopen05g010220 Solanum pennellii HOM05D008291 ORTHO05D012653 4.6e-18 95.1 90 45.6
Glyma.13G086800 Glycine max HOM05D008291 ORTHO05D003568 3.9e-17 92.0 103 46.6
Sopen03g016170 Solanum pennellii HOM05D008291 ORTHO05D016169 5.1e-17 91.7 90 43.3
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 6.2e-15 84.7 127 36.2
CiPaw.14G126400 Carya illinoinensis HOM05D003120 ORTHO05D003568 4.0e-14 82.0 113 38.1
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 2.6e-13 79.3 107 35.5
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 5.8e-13 78.2 112 30.4
Solyc09g005280.3 Solanum lycopersicum HOM05D008291 ORTHO05D000669 5.8e-13 78.2 71 45.1
RcHm_v2.0_Chr4g0385011 Rosa chinensis HOM05D008705 ORTHO05D000669 9.9e-13 77.4 115 33.9
Glyma.16G084900 Glycine max HOM05D008291 ORTHO05D003568 1.3e-12 77.0 74 50.0
PGSC0003DMG401021786 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.7e-12 76.6 82 43.9
Peaxi162Scf00046g00248 Petunia axillaris HOM05D003120 ORTHO05D003568 1.1e-11 73.9 115 33.9
Peaxi162Scf00473g00101 Petunia axillaris HOM05D003120 ORTHO05D003568 1.4e-11 73.6 135 31.1
RcHm_v2.0_Chr0c17g0499961 Rosa chinensis HOM05D008705 ORTHO05D000669 2.4e-11 72.8 104 34.6
Nitab4.5_0001836g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.2e-11 72.4 149 29.5
Nitab4.5_0000892g0160 Nicotiana tabacum HOM05D003120 ORTHO05D003568 4.2e-11 72.0 116 31.0
Peaxi162Scf00005g02812 Petunia axillaris HOM05D003120 ORTHO05D003568 4.2e-11 72.0 115 31.3
Peaxi162Scf00010g00918 Petunia axillaris HOM05D003120 ORTHO05D003568 4.2e-11 72.0 115 31.3
Nitab4.5_0003305g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 7.1e-11 71.2 139 31.7
PGSC0003DMG400018828 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.2e-10 70.5 80 38.8
Nitab4.5_0006586g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.6e-10 70.1 116 31.0
Peaxi162Scf00436g00007 Petunia axillaris HOM05D003120 ORTHO05D003568 2.7e-10 69.3 116 31.0
Peaxi162Scf00941g00044 Petunia axillaris HOM05D003120 ORTHO05D003568 2.7e-10 69.3 115 30.4
Sopen01g033440 Solanum pennellii HOM05D003120 ORTHO05D003568 2.7e-10 69.3 118 33.1
Nitab4.5_0003517g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.5e-10 68.9 119 29.4
Oeu006554.1 Olea europaea HOM05D017951 ORTHO05D020916 3.5e-10 68.9 114 32.5
Peaxi162Scf00524g00083 Petunia axillaris HOM05D003120 ORTHO05D003568 4.6e-10 68.6 116 31.0
TPR.G10058 Trifolium pratense HOM05D008291 ORTHO05D003568 6.0e-10 68.2 54 59.3
Peaxi162Scf00085g00199 Petunia axillaris HOM05D003120 ORTHO05D003568 7.9e-10 67.8 116 31.0
Peaxi162Scf00250g00511 Petunia axillaris HOM05D003120 ORTHO05D003568 7.9e-10 67.8 116 31.0
Peaxi162Scf00878g00111 Petunia axillaris HOM05D003120 ORTHO05D003568 7.9e-10 67.8 117 32.5
Peaxi162Scf02251g00003 Petunia axillaris HOM05D003120 ORTHO05D003568 7.9e-10 67.8 116 31.0
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 1.0e-09 67.4 119 31.9
Nitab4.5_0006729g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.3e-09 67.0 116 31.0
Peaxi162Scf00009g00715 Petunia axillaris HOM05D003120 ORTHO05D003568 2.3e-09 66.2 125 28.8
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 2.3e-09 66.2 107 30.8
Nitab4.5_0002512g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.9e-09 65.5 119 29.4
Peaxi162Scf00311g00619 Petunia axillaris HOM05D003120 ORTHO05D003568 5.1e-09 65.1 115 28.7
RcHm_v2.0_Chr1g0345631 Rosa chinensis HOM05D008705 ORTHO05D000669 5.1e-09 65.1 109 29.4
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 5.1e-09 65.1 107 29.9
Peaxi162Scf00381g00218 Petunia axillaris HOM05D003120 ORTHO05D003568 6.7e-09 64.7 89 34.8
CAN.G485.13 Capsicum annuum HOM05D008291 ORTHO05D012653 8.7e-09 64.3 71 40.8
FvH4_2g08145 Fragaria vesca HOM05D008705 ORTHO05D000669 1.1e-08 63.9 111 30.6
FvH4_4g05492 Fragaria vesca HOM05D008705 ORTHO05D000669 1.1e-08 63.9 111 30.6
Nitab4.5_0000008g0220 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.5e-08 63.5 116 28.4
Nitab4.5_0000433g0100 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.5e-08 63.5 116 29.3
Peaxi162Scf00091g01210 Petunia axillaris HOM05D003120 ORTHO05D003568 1.5e-08 63.5 93 33.3
Peaxi162Scf00131g00120 Petunia axillaris HOM05D003120 ORTHO05D003568 1.5e-08 63.5 116 29.3
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.9e-08 63.2 111 30.6
PSO832G4275 Papaver somniferum HOM05D008705 ORTHO05D000669 1.9e-08 63.2 116 29.3
Nitab4.5_0005809g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.5e-08 62.8 116 30.2
FAN20G2701 Fragaria x ananassa HOM05D008705 ORTHO05D000669 5.6e-08 61.6 114 31.6
Peaxi162Scf00091g00169 Petunia axillaris HOM05D003120 ORTHO05D003568 5.6e-08 61.6 136 28.7
TWI18G1095 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.6e-08 61.6 123 30.9
TWI73G1228 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.6e-08 61.6 123 30.9
TPR.G22591 Trifolium pratense HOM05D008291 ORTHO05D003568 7.4e-08 61.2 32 96.9
Nitab4.5_0011072g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 9.6e-08 60.8 135 25.9
Nitab4.5_0000765g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.6e-07 60.1 135 28.1
Nitab4.5_0008225g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.6e-07 60.1 55 43.6
FAN09G1129 Fragaria x ananassa HOM05D008705 ORTHO05D000669 2.1e-07 59.7 118 28.8
Nitab4.5_0000210g0170 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.1e-07 59.7 115 27.0
Peaxi162Scf00373g00084 Petunia axillaris HOM05D003120 ORTHO05D003568 2.1e-07 59.7 75 37.3
TWI73G0990 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 2.1e-07 59.7 91 33.0
CAN.G480.6 Capsicum annuum HOM05D003120 ORTHO05D003568 2.8e-07 59.3 116 26.7
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 2.8e-07 59.3 118 29.7
FAN15G0639 Fragaria x ananassa HOM05D008705 ORTHO05D000669 3.7e-07 58.9 118 28.8
Peaxi162Scf00167g00047 Petunia axillaris HOM05D003120 ORTHO05D003568 3.7e-07 58.9 135 26.7
Aqoxy3G01388 Aquilegia oxysepala HOM05D000791 ORTHO05D000669 4.8e-07 58.5 106 24.5
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 6.2e-07 58.2 97 29.9
Peaxi162Scf00830g00027 Petunia axillaris HOM05D003120 ORTHO05D003568 6.2e-07 58.2 55 38.2
Nitab4.5_0001521g0040 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.1e-07 57.8 135 25.9
Nitab4.5_0006444g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.1e-07 57.8 115 30.4
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 1.1e-06 57.4 97 29.9
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 1.1e-06 57.4 97 29.9
EL10Ac3g06529 Beta vulgaris HOM05D008455 ORTHO05D009597 1.1e-06 57.4 97 29.9
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 1.1e-06 57.4 97 29.9
EL10Ac9g22691 Beta vulgaris HOM05D008455 ORTHO05D009597 1.1e-06 57.4 97 29.9
PGSC0003DMG402013972 Solanum tuberosum HOM05D003120 ORTHO05D003568 1.1e-06 57.4 94 28.7
Nitab4.5_0002287g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.8e-06 56.6 56 39.3
CAN.G585.2 Capsicum annuum HOM05D003120 ORTHO05D003568 2.4e-06 56.2 137 22.6
Nitab4.5_0002137g0170 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.4e-06 56.2 50 46.0
Peaxi162Scf01480g00009 Petunia axillaris HOM05D003120 ORTHO05D003568 2.4e-06 56.2 86 36.0
EL10As3g23351 Beta vulgaris HOM05D008455 ORTHO05D009597 3.1e-06 55.8 95 28.4
Manes.12G086248 Manihot esculenta HOM05D009290 ORTHO05D009597 3.1e-06 55.8 111 30.6
Nitab4.5_0005834g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 4.0e-06 55.5 116 27.6
CANSAT56G1590 Cannabis sativa HOM05D009677 ORTHO05D011883 5.3e-06 55.1 118 23.7
Nitab4.5_0000444g0180 Nicotiana tabacum HOM05D003120 ORTHO05D003568 5.3e-06 55.1 50 46.0
Nitab4.5_0002177g0060 Nicotiana tabacum HOM05D003120 ORTHO05D003568 5.3e-06 55.1 55 41.8
Peaxi162Scf00041g00711 Petunia axillaris HOM05D003120 ORTHO05D003568 5.3e-06 55.1 56 37.5
CAN.G405.11 Capsicum annuum HOM05D000062 ORTHO05D000043 6.9e-06 54.7 51 43.1
Nitab4.5_0002038g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 9.0e-06 54.3 75 34.7


User provided reference genes

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