Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 8.2e-92 340.5 187 100.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-66 256.9 189 78.3
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 4.0e-62 241.9 193 76.2
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.7e-60 235.3 192 72.9
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.2e-49 199.5 186 66.7
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 4.2e-48 195.3 192 65.6
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.7e-47 192.6 190 62.6
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.8e-46 189.9 190 62.1
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 4.1e-43 178.7 205 59.0
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.7e-42 176.0 195 60.0
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 5.0e-41 171.8 214 56.1
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.5e-40 170.2 190 61.6
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 9.5e-40 167.5 208 56.2
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 2.1e-39 166.4 208 56.2
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 6.1e-39 164.9 210 57.6
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 7.5e-37 157.9 145 71.7
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 4.1e-35 152.1 208 54.8
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 9.2e-35 151.0 204 52.9
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 9.2e-35 151.0 203 53.2
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 2.7e-34 149.4 203 54.2
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 5.9e-34 148.3 203 52.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-33 146.7 207 47.3
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.9e-32 143.3 208 52.9
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 9.5e-32 141.0 202 51.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 2.1e-31 139.8 207 52.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.6e-31 139.0 196 47.4
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 6.2e-31 138.3 207 53.6
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 6.2e-31 138.3 207 53.6
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 6.2e-31 138.3 206 49.5
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 6.2e-31 138.3 209 51.7
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.4e-30 137.1 204 51.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.4e-30 137.1 201 49.3
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 6.8e-30 134.8 196 45.9
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.9e-30 134.4 206 50.0
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 2.6e-29 132.9 206 49.0
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.4e-29 132.5 204 50.5
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 5.8e-29 131.7 205 48.8
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.5e-29 131.3 200 50.0
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.2e-28 129.8 204 50.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.2e-28 129.8 205 48.3
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.9e-28 128.6 209 49.8
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.4e-28 128.3 194 50.5
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.4e-28 128.3 198 50.5
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.3e-28 127.9 198 50.5
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.4e-27 127.1 197 52.3
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.9e-27 126.7 156 58.3
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.2e-27 125.9 194 51.0
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.2e-27 125.9 194 51.0
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 9.2e-27 124.4 197 43.1
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.2e-27 124.4 198 50.0
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.2e-26 124.0 208 50.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.6e-26 123.6 199 43.2
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 2.0e-26 123.2 181 49.2
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.7e-26 122.9 206 46.6
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 3.5e-26 122.5 197 47.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 4.6e-26 122.1 208 48.6
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.0e-26 121.7 192 50.5
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 6.0e-26 121.7 209 48.3
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.8e-26 121.3 204 48.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-25 120.9 205 43.9
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-25 120.9 205 43.9
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.0e-25 120.9 204 46.6
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.3e-25 119.8 189 53.4
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 3.0e-25 119.4 209 48.3
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.0e-25 119.4 205 47.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 5.0e-25 118.6 194 51.0
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 5.0e-25 118.6 208 48.1
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 8.6e-25 117.9 206 47.1
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.9e-24 116.7 203 48.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.9e-24 116.7 190 44.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.9e-24 116.7 185 52.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.9e-24 116.7 214 46.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.5e-24 116.3 205 42.0
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 3.3e-24 115.9 177 50.8
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.3e-24 115.9 170 51.8
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 4.3e-24 115.5 205 41.5
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.6e-24 115.2 206 46.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.6e-24 115.2 206 46.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 5.6e-24 115.2 204 49.5
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 9.5e-24 114.4 205 44.9
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 9.5e-24 114.4 206 46.1
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-23 113.2 185 51.4
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-23 113.2 202 48.5
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.8e-23 112.8 197 47.7
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 4.7e-23 112.1 208 48.6
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 4.7e-23 112.1 207 48.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.7e-23 112.1 185 51.4
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 4.7e-23 112.1 207 45.9
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.2e-23 111.7 191 48.7
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.1e-22 110.9 184 42.4
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.4e-22 110.5 175 42.9
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.4e-22 110.5 208 48.1
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.8e-22 110.2 186 41.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.3e-22 109.8 184 41.8
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.3e-22 109.8 180 40.0
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.1e-22 109.4 189 43.9
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 3.1e-22 109.4 208 49.0
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.1e-22 109.4 198 47.0
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.2e-22 108.6 207 47.3
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 6.8e-22 108.2 196 45.4
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.2e-21 107.5 179 40.2
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.5e-21 107.1 191 42.9
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.0e-21 106.7 208 46.2
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.0e-21 106.7 197 39.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-21 106.7 214 46.7
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.0e-21 106.7 185 47.6
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.6e-21 106.3 197 40.6
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.6e-21 106.3 187 42.2
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.4e-21 105.9 182 40.7
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 5.8e-21 105.1 189 42.3
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 7.5e-21 104.8 195 45.1
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 7.5e-21 104.8 189 42.9
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.5e-21 104.8 215 46.5
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.9e-20 102.8 208 46.6
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.7e-20 102.4 209 46.9
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 4.9e-20 102.1 184 41.8
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 6.4e-20 101.7 176 40.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 6.4e-20 101.7 180 40.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 6.4e-20 101.7 193 39.4
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.4e-20 101.7 215 46.5
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.4e-19 100.5 207 43.5
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.4e-19 100.5 192 40.6
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.9e-19 100.1 195 40.5
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.9e-19 100.1 192 39.1
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-19 100.1 209 46.9
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.4e-19 99.8 200 47.5
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 4.1e-19 99.0 172 47.7
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 4.1e-19 99.0 199 44.2
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 5.4e-19 98.6 190 41.1
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.4e-19 98.6 193 44.6
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 7.1e-19 98.2 174 39.1
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 7.1e-19 98.2 182 44.5
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 9.2e-19 97.8 195 48.2
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.2e-18 97.4 207 44.0
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.7e-18 96.3 179 38.5
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 4.6e-18 95.5 162 42.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.6e-18 95.5 187 42.8
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 4.6e-18 95.5 200 40.5
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.0e-18 95.1 143 44.1
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 6.0e-18 95.1 141 45.4
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 6.0e-18 95.1 205 43.9
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 6.0e-18 95.1 190 46.8
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.3e-17 94.0 197 38.6
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 3.0e-17 92.8 195 41.0
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 6.6e-17 91.7 164 43.9
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 8.6e-17 91.3 206 41.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.1e-16 90.9 208 46.2
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.5e-16 89.7 166 41.0
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 3.3e-16 89.4 158 46.2
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 9.5e-16 87.8 180 40.6
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.1e-15 86.7 174 38.5
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.8e-15 86.3 179 43.6
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.3e-14 83.2 176 40.9
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.0e-14 82.4 206 40.3
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.0e-14 82.4 202 41.6
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.2e-14 82.0 177 37.3
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.5e-13 80.5 100 43.0
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 3.4e-13 79.3 124 43.5
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 7.6e-13 78.2 97 62.9
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.9e-12 76.3 207 39.1
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.9e-12 76.3 120 57.5
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 3.7e-12 75.9 90 56.7
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 3.7e-12 75.9 90 56.7
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 6.4e-12 75.1 197 40.6
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.4e-12 75.1 96 51.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 9.2e-11 71.2 203 38.9
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 2.1e-10 70.1 168 44.0
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 3.5e-10 69.3 203 39.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 6.0e-10 68.6 143 33.6
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.7e-09 67.0 83 50.6
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 8.6e-09 64.7 204 37.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-08 63.5 210 39.0
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 1.6e-07 60.5 86 55.8
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 8.1e-07 58.2 77 53.2


User provided reference genes

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