Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 0.0e+00 1172.5 568 100.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 0.0e+00 1139.4 568 96.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 0.0e+00 1125.5 568 94.5
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 0.0e+00 1115.9 568 93.8
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1095.1 568 91.5
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1088.9 568 90.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1085.5 568 90.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 0.0e+00 1082.4 568 90.3
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1078.2 568 90.1
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1077.8 568 89.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 0.0e+00 1077.4 568 89.6
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 0.0e+00 1075.5 565 89.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 7.8e-312 1072.8 568 89.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.8e-311 1070.1 568 88.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 6.5e-310 1066.6 568 89.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 568 88.7
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 568 88.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 568 88.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 88.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 87.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 568 87.7
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 557 89.6
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 571 88.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 568 87.9
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 8.3e-305 1049.7 567 86.8
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 568 88.2
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 564 87.2
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 563 88.6
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 561 87.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 563 88.1
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 563 88.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 573 87.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 563 87.2
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 561 87.7
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 573 87.4
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 563 87.4
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 566 86.9
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 561 87.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 561 87.3
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 568 86.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 561 87.2
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.0e-299 1031.2 568 86.8
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 568 86.6
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 568 87.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 563 87.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 563 86.0
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 563 86.0
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 568 85.6
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 568 85.4
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 568 85.4
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 567 85.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 565 85.3
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 563 87.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 563 87.0
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 567 85.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 563 86.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 567 85.5
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 568 84.9
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 565 85.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 4.6e-295 1017.3 561 86.6
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.7e-294 1015.4 565 83.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 565 85.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 568 84.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 568 85.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.5e-293 1012.3 563 86.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-293 1011.1 562 85.6
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 568 83.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 568 83.8
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 565 82.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 557 85.8
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 564 84.8
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 556 85.3
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 565 84.4
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 564 84.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 563 84.9
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.2e-289 998.4 565 83.0
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.9e-289 997.3 571 83.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.3e-289 996.5 552 84.6
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.1e-288 996.1 569 83.5
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.9e-288 995.3 550 85.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 9.2e-288 993.0 561 84.3
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.0e-287 991.9 551 84.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-284 982.6 567 83.2
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.6e-284 981.1 570 82.6
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 81.9
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.8e-283 978.8 550 84.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.3e-283 978.4 549 84.0
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 82.3
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.2e-283 977.2 567 82.5
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 8.9e-283 976.5 534 85.8
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 82.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 82.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 82.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 81.7
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 83.2
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 83.2
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-282 975.3 564 81.9
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.0e-282 975.3 564 83.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.6e-282 974.9 564 81.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 82.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 81.7
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.4e-282 974.2 549 83.6
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 81.9
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 81.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 81.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-281 970.3 564 81.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 6.4e-281 970.3 564 81.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.6e-279 964.1 564 80.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.0e-278 963.0 564 80.9
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.3e-278 962.6 564 80.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 5.1e-278 960.7 564 80.7
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.6e-276 955.7 568 79.2
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.4e-275 952.6 562 81.7
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 6.8e-275 950.3 568 78.5
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 8.9e-275 949.9 562 81.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.2e-274 949.5 564 80.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.1e-272 941.0 568 77.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.7e-270 935.6 564 77.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-270 935.6 568 77.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.6e-269 930.6 563 81.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.2e-268 929.5 564 77.5
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 6.0e-263 910.6 571 74.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 7.8e-263 910.2 564 78.7
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.8e-263 910.2 565 75.4
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 8.7e-262 906.7 524 82.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-261 905.2 571 73.9
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-261 904.8 568 74.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.3e-261 904.4 570 75.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 5.6e-261 904.0 570 75.4
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.1e-260 902.1 565 75.6
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.2e-256 887.9 574 73.0
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.6e-255 885.9 564 73.9
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.9e-249 865.1 557 77.0
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 7.1e-248 860.5 562 73.1
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.3e-246 856.3 565 72.4
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.5e-245 852.0 564 71.5
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-245 851.7 569 72.4
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 4.0e-243 844.7 568 72.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.2e-233 812.4 469 80.4
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.4e-230 803.1 424 89.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.3e-212 743.4 567 66.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.1e-211 738.8 563 66.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.7e-206 721.1 425 80.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-185 651.0 373 80.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.2e-178 630.6 541 55.5
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.9e-168 596.7 329 83.3
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.3e-168 595.9 417 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.3e-166 589.7 488 55.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.0e-161 574.3 523 51.8
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 4.4e-157 558.9 292 87.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.4e-147 527.3 418 58.9
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-137 494.2 567 49.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-135 487.3 568 49.1
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 8.2e-127 458.4 319 69.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.0e-126 456.1 468 54.1
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.8e-89 334.3 213 77.0
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 4.8e-87 326.2 549 39.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 5.2e-81 306.2 491 36.0
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 6.6e-68 262.7 153 79.1
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 7.3e-67 259.2 153 77.8
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.7e-61 240.7 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.6e-52 209.1 132 78.0
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.9e-49 199.1 133 76.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.7e-47 193.7 128 78.1
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.9e-43 181.4 128 68.0
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-43 181.0 166 59.6
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 9.6e-43 179.1 166 59.6
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-42 178.3 166 59.6
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.8e-41 174.9 166 59.0
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.1e-38 165.6 319 31.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.0e-33 146.0 493 26.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.3e-31 142.1 87 73.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.1e-30 136.3 95 68.4
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-27 129.0 213 38.5
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.1e-26 124.8 76 68.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.1e-26 124.8 85 64.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 6.0e-21 106.7 184 39.1
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 8.7e-20 102.8 166 40.4
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.7e-18 97.4 59 69.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-11 75.5 46 65.2
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 2.9e-07 61.2 73 54.8


User provided reference genes

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