Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.6e-60 235.3 133 100.0
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.1e-50 203.4 149 77.2
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.9e-50 202.6 147 75.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 3.0e-48 195.3 147 74.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.7e-46 189.5 147 70.7
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.8e-46 188.0 147 70.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 6.3e-46 187.6 147 69.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.3e-43 179.9 147 71.4
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 5.0e-43 177.9 144 66.7
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.4e-42 176.4 147 67.3
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.9e-42 176.0 147 70.1
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.2e-42 175.3 147 66.7
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 9.4e-42 173.7 139 67.6
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.4e-40 169.9 147 63.9
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.4e-40 169.9 147 66.0
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.8e-40 169.5 147 65.3
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 2.3e-40 169.1 147 62.6
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 3.0e-40 168.7 147 64.6
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.0e-40 168.7 147 64.6
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 3.9e-40 168.3 144 66.7
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.9e-40 168.3 144 66.7
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 6.7e-40 167.5 147 64.6
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 8.8e-40 167.2 147 65.3
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 8.8e-40 167.2 147 65.3
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 8.8e-40 167.2 144 66.0
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 8.8e-40 167.2 144 66.0
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.1e-39 166.8 147 63.3
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.5e-39 166.4 144 66.0
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.6e-39 165.6 147 62.6
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 4.4e-39 164.9 147 63.9
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 4.4e-39 164.9 148 64.2
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.7e-39 164.5 148 64.9
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.7e-39 164.5 148 64.9
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 5.7e-39 164.5 147 63.9
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 7.4e-39 164.1 147 62.6
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.3e-38 163.3 146 64.4
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.3e-38 163.3 144 62.5
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.7e-38 162.9 147 62.6
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.7e-38 162.9 147 62.6
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.7e-38 162.9 149 63.1
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.7e-38 162.9 147 62.6
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.7e-38 162.9 147 63.3
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-38 162.5 147 63.9
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 6.3e-38 161.0 147 62.6
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.1e-37 160.2 147 63.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 1.4e-37 159.8 147 63.3
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.4e-37 159.1 147 61.2
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 4.1e-37 158.3 147 63.9
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 7.0e-37 157.5 147 59.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 9.1e-37 157.1 147 61.9
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 9.1e-37 157.1 147 61.2
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.2e-36 156.8 149 61.1
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.2e-36 156.8 144 61.1
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.6e-36 156.4 147 60.5
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.6e-36 156.4 147 63.3
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 2.0e-36 156.0 147 61.9
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 2.6e-36 155.6 147 61.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 3.5e-36 155.2 147 60.5
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.5e-36 154.8 147 59.2
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.5e-36 154.8 147 59.2
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.0e-35 153.7 147 62.6
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.3e-35 153.3 150 60.7
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-35 153.3 147 61.9
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-35 153.3 147 61.9
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-35 153.3 147 61.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.3e-35 153.3 147 61.2
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.3e-35 153.3 148 62.2
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.9e-35 152.1 149 61.1
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 6.5e-35 151.0 149 61.1
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 8.5e-35 150.6 147 60.5
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-34 150.2 147 61.2
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 1.5e-34 149.8 147 61.9
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.9e-34 149.4 147 58.5
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.9e-34 149.4 149 59.1
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 5.5e-34 147.9 147 59.9
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 7.2e-34 147.5 156 57.7
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-33 146.7 149 57.7
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 2.1e-33 146.0 147 59.9
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 4.7e-33 144.8 147 55.1
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.0e-32 143.7 149 59.1
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 3.0e-32 142.1 148 60.1
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.0e-32 141.7 147 57.8
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 4.0e-32 141.7 147 55.1
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.5e-31 139.8 147 57.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.5e-31 139.8 147 57.1
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 2.0e-31 139.4 149 55.7
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.4e-31 138.7 138 59.4
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.7e-31 137.9 147 57.1
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 7.5e-31 137.5 150 56.0
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 7.5e-31 137.5 150 56.0
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.3e-30 136.7 149 57.7
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.8e-29 132.9 150 53.3
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 3.1e-29 132.1 152 56.6
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.0e-27 127.1 152 50.0
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.3e-27 126.7 153 51.6
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 3.8e-27 125.2 151 52.3
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.1e-26 123.6 152 51.3
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.5e-26 121.3 154 49.4
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 7.2e-26 120.9 115 59.1
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 7.2e-26 120.9 155 50.3
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 7.2e-26 120.9 158 49.4
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 9.4e-26 120.6 154 50.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.1e-25 119.4 147 48.3
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 2.1e-25 119.4 155 49.0
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 3.6e-25 118.6 150 50.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.0e-25 117.5 147 46.9
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 8.8e-24 114.0 161 46.0
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.7e-23 111.3 133 54.1
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 7.5e-23 110.9 149 47.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.7e-22 109.8 152 48.7
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.1e-21 107.1 140 50.0
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.1e-21 107.1 109 56.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-21 106.7 139 47.5
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.4e-21 106.7 139 47.5
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.4e-21 105.9 150 47.3
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 3.1e-21 105.5 113 59.3
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 2.7e-20 102.4 100 59.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 2.3e-19 99.4 145 44.8
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 2.9e-19 99.0 129 47.3
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.5e-18 96.7 105 52.4
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.0e-17 90.9 135 47.4
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.4e-16 90.1 131 48.1
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 4.0e-16 88.6 153 41.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.4e-13 80.1 86 54.7
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 5.4e-13 78.2 51 76.5
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 1.2e-12 77.0 134 38.8
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 3.5e-12 75.5 103 48.5
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 3.5e-12 75.5 103 48.5
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.3e-11 73.6 93 50.5
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 7.3e-10 67.8 152 35.5
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 3.6e-09 65.5 87 46.0
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.8e-08 61.2 51 60.8
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 6.8e-08 61.2 51 60.8
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 2.0e-07 59.7 148 33.1
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.6e-07 59.3 84 42.9
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.4e-07 58.5 84 42.9
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 4.4e-07 58.5 51 58.8
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.8e-07 58.2 84 41.7
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.3e-06 57.0 51 52.9
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.7e-06 56.6 69 49.3


User provided reference genes

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