Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21519 Trifolium pratense HOM05D000127 ORTHO05D412778 1.7e-32 142.1 73 100.0
Medtr7g099800 Medicago truncatula HOM05D000127 ORTHO05D000792 2.2e-29 131.7 73 91.8
Ca_08779_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000792 8.5e-29 129.8 70 91.4
Psat0s350g0080 Pisum sativum HOM05D000127 ORTHO05D000792 8.5e-29 129.8 74 93.2
TPR.G35251 Trifolium pratense HOM05D000127 ORTHO05D000792 1.1e-28 129.4 73 91.8
Medtr7g099750 Medicago truncatula HOM05D000127 ORTHO05D000792 1.4e-26 122.5 73 84.9
Lj1g0002596 Lotus japonicus HOM05D000127 ORTHO05D000792 5.0e-21 104.0 69 73.9
Glyma.03G171500 Glycine max HOM05D000127 ORTHO05D000792 4.3e-12 74.3 66 60.6
arahy.Tifrunner.gnm1.ann1.ATW5XU Arachis hypogaea HOM05D000127 ORTHO05D000792 1.6e-11 72.4 49 75.5
VMungo1383G0148 Vigna mungo HOM05D000127 ORTHO05D000792 2.8e-11 71.6 54 70.4
arahy.Tifrunner.gnm1.ann1.F0M84G Arachis hypogaea HOM05D000127 ORTHO05D000792 3.6e-11 71.2 49 73.5
Phvul.001G169300 Phaseolus vulgaris HOM05D000127 ORTHO05D000792 8.0e-11 70.1 55 65.5
Cfa017416 Carpinus fangiana HOM05D000127 ORTHO05D000792 1.0e-10 69.7 61 65.6
GSVIVG01034209001 Vitis vinifera HOM05D000127 ORTHO05D000792 1.0e-10 69.7 70 60.0
Haze_20755 Corylus avellana HOM05D000127 ORTHO05D000792 1.4e-10 69.3 61 63.9
MD04G1124500 Malus domestica HOM05D000127 ORTHO05D000792 1.4e-10 69.3 65 66.2
Nn2g12927 Nelumbo nucifera HOM05D000127 ORTHO05D000792 4.0e-10 67.8 73 57.5
Thecc.05G042900 Theobroma cacao HOM05D000127 ORTHO05D000792 4.0e-10 67.8 53 64.2
Sabra01G0108100 Salix brachista HOM05D000127 ORTHO05D000792 5.2e-10 67.4 55 67.3
Ciclev10011060m.g Citrus clementina HOM05D000127 ORTHO05D000792 6.8e-10 67.0 71 56.3
Sabra06G0038700 Salix brachista HOM05D000127 ORTHO05D000792 6.8e-10 67.0 68 60.3
Sabra06G0038800 Salix brachista HOM05D000127 ORTHO05D000792 6.8e-10 67.0 67 61.2
TAR636G1805 Trochodendron aralioides HOM05D000127 ORTHO05D000792 6.8e-10 67.0 61 59.0
Actinidia19764 Actinidia chinensis HOM05D000127 ORTHO05D000792 8.9e-10 66.6 49 67.3
Ah.13g076630 Amaranthus hybridus HOM05D000127 ORTHO05D000792 8.9e-10 66.6 61 57.4
CiPaw.09G190200 Carya illinoinensis HOM05D000127 ORTHO05D000792 1.2e-09 66.2 73 54.8
Gohir.A01G220600 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.2e-09 66.2 58 56.9
Lj2C98G3 Lonicera japonica HOM05D000127 ORTHO05D000792 1.2e-09 66.2 61 59.0
Ah.12g062370 Amaranthus hybridus HOM05D000127 ORTHO05D000792 1.5e-09 65.9 49 67.3
PSO339G6644 Papaver somniferum HOM05D000127 ORTHO05D000792 1.5e-09 65.9 62 61.3
PSO384G1564 Papaver somniferum HOM05D000127 ORTHO05D000792 1.5e-09 65.9 62 61.3
CSS0002538 Camellia sinensis var. sinensis HOM05D000127 ORTHO05D000792 2.0e-09 65.5 49 69.4
Gohir.D01G209600 Gossypium hirsutum HOM05D000127 ORTHO05D000792 2.0e-09 65.5 58 55.2
Gorai.002G255100 Gossypium raimondii HOM05D000127 ORTHO05D000792 2.0e-09 65.5 58 55.2
Lalb_Chr01g0019271 Lupinus albus HOM05D000127 ORTHO05D000792 2.0e-09 65.5 50 68.0
Prupe.6G251700 Prunus persica HOM05D000127 ORTHO05D000792 2.0e-09 65.5 64 57.8
Sc07g0006120 Simmondsia chinensis HOM05D000127 ORTHO05D000792 2.6e-09 65.1 60 56.7
TAR633G1414 Trochodendron aralioides HOM05D000127 ORTHO05D000792 3.4e-09 64.7 49 69.4
COL.COLO4_14840 Corchorus olitorius HOM05D000127 ORTHO05D000792 5.8e-09 63.9 70 54.3
RcHm_v2.0_Chr3g0467061 Rosa chinensis HOM05D000127 ORTHO05D000792 7.5e-09 63.5 49 65.3
TWI74G1110 Tripterygium wilfordii HOM05D000127 ORTHO05D000792 7.5e-09 63.5 70 54.3
Atru.chr8.1943 Acer truncatum HOM05D000127 ORTHO05D000792 9.8e-09 63.2 49 65.3
DCAR_014839 Daucus carota HOM05D000127 ORTHO05D000792 1.7e-08 62.4 54 57.4
Gohir.A04G081600 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.7e-08 62.4 69 50.7
Gohir.D04G120200 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.7e-08 62.4 69 50.7
Gorai.012G102300 Gossypium raimondii HOM05D000127 ORTHO05D000792 1.7e-08 62.4 69 50.7
Oeu049220.1 Olea europaea HOM05D000127 ORTHO05D000792 1.7e-08 62.4 49 65.3
Rhsim05G0188500 Rhododendron simsii HOM05D000127 ORTHO05D000792 1.7e-08 62.4 47 70.2
Aqoxy4G02986 Aquilegia oxysepala HOM05D000127 ORTHO05D000792 2.9e-08 61.6 54 64.8
AUR62041755 Chenopodium quinoa HOM05D000127 ORTHO05D000792 2.9e-08 61.6 61 59.0
Duzib093G0746 Durio zibethinus HOM05D000127 ORTHO05D000792 2.9e-08 61.6 53 62.3
EL10Ac5g11601 Beta vulgaris HOM05D000127 ORTHO05D000792 3.7e-08 61.2 49 67.3
PGR004G0760 Punica granatum HOM05D000127 ORTHO05D000792 3.7e-08 61.2 53 62.3
MD12G1139700 Malus domestica HOM05D000127 ORTHO05D000792 4.9e-08 60.8 64 60.9
CANSAT35G1582 Cannabis sativa HOM05D000127 ORTHO05D000792 1.1e-07 59.7 62 56.5
MBI14_g24319_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000792 1.4e-07 59.3 49 63.3
AT3G53720 Arabidopsis thaliana HOM05D000127 ORTHO05D000792 2.4e-07 58.5 49 57.1
Carub.0005s2030 Capsella rubella HOM05D000127 ORTHO05D000792 2.4e-07 58.5 55 54.5
Lsat_1_v5_gn_2_111460 Lactuca sativa HOM05D000127 ORTHO05D000792 2.4e-07 58.5 54 53.7
FAN05G0155 Fragaria x ananassa HOM05D000127 ORTHO05D000792 3.2e-07 58.2 39 74.4
FAN14G4096 Fragaria x ananassa HOM05D000127 ORTHO05D000792 3.2e-07 58.2 39 74.4
Eucgr.K03152 Eucalyptus grandis HOM05D000127 ORTHO05D000792 4.1e-07 57.8 50 58.0
BcaC02g09136 Brassica carinata HOM05D000127 ORTHO05D000792 9.2e-07 56.6 49 55.1
C04p38820 Brassica napus HOM05D000127 ORTHO05D000792 9.2e-07 56.6 49 55.1
BolC4t25455H Brassica oleracea HOM05D000127 ORTHO05D000792 9.2e-07 56.6 49 55.1
ClCG04G008360 Citrullus lanatus HOM05D000127 ORTHO05D000792 9.2e-07 56.6 62 51.6
BcaB02g07767 Brassica carinata HOM05D000127 ORTHO05D000792 1.2e-06 56.2 49 55.1
BcaC08g44646 Brassica carinata HOM05D000127 ORTHO05D000792 1.2e-06 56.2 49 57.1
C06p21620 Brassica napus HOM05D000127 ORTHO05D000792 1.2e-06 56.2 49 57.1
BolC6t37350H Brassica oleracea HOM05D000127 ORTHO05D000792 1.2e-06 56.2 49 57.1
BraA07t29861Z Brassica rapa HOM05D000127 ORTHO05D000792 1.2e-06 56.2 49 57.1
CiPaw.10G143800 Carya illinoinensis HOM05D000127 ORTHO05D000792 1.2e-06 56.2 50 62.0
A07p21790 Brassica napus HOM05D000127 ORTHO05D000792 1.6e-06 55.8 49 55.1
CARHR163620 Cardamine hirsuta HOM05D000127 ORTHO05D000792 1.6e-06 55.8 49 53.1
Sp5g08660 Schrenkiella parvula HOM05D000127 ORTHO05D000792 1.6e-06 55.8 49 55.1
AL5G34690 Arabidopsis lyrata HOM05D000127 ORTHO05D000792 2.0e-06 55.5 49 53.1
BcaB02g08511 Brassica carinata HOM05D000127 ORTHO05D000792 2.0e-06 55.5 49 55.1
CsaV3_4G024790 Cucumis sativus L. HOM05D000127 ORTHO05D000792 2.7e-06 55.1 62 48.4
Thhalv10010121m.g Eutrema salsugineum HOM05D000127 ORTHO05D000792 2.7e-06 55.1 49 53.1
A04p05910 Brassica napus HOM05D000127 ORTHO05D000792 3.5e-06 54.7 49 53.1
BraA04t16295Z Brassica rapa HOM05D000127 ORTHO05D000792 3.5e-06 54.7 49 53.1
MELO3C003113.2 Cucumis melo HOM05D000127 ORTHO05D000792 3.5e-06 54.7 60 51.7
vmacro20130 Vaccinium macrocarpon HOM05D000127 ORTHO05D000792 3.5e-06 54.7 48 56.2
Lj2A3G34 Lonicera japonica HOM05D000127 ORTHO05D000792 4.6e-06 54.3 61 54.1
Os05g0113300 Oryza sativa ssp. japonica HOM05D000127 ORTHO05D000792 4.6e-06 54.3 46 58.7
CDE09G0497 Ceratophyllum demersum HOM05D000127 ORTHO05D000792 6.0e-06 53.9 49 57.1
HanXRQChr07g0196251 Helianthus annuus HOM05D000127 ORTHO05D000792 6.0e-06 53.9 59 47.5


User provided reference genes

Program Settings