Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21510 Trifolium pratense HOM05D004224 ORTHO05D006437 9.7e-65 250.0 125 100.0
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 8.0e-43 177.2 130 76.2
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 1.2e-41 173.3 125 75.2
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 2.2e-40 169.1 131 74.0
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 3.1e-31 138.7 130 60.8
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 2.3e-29 132.5 127 60.6
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 3.8e-29 131.7 113 62.8
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 1.9e-28 129.4 127 58.3
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 7.3e-28 127.5 121 58.7
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 1.2e-27 126.7 118 60.2
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 3.6e-27 125.2 113 61.9
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 3.6e-27 125.2 112 60.7
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 3.6e-27 125.2 116 56.9
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 4.7e-27 124.8 92 68.5
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 1.4e-26 123.2 115 55.7
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.4e-26 123.2 115 55.7
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 1.4e-26 123.2 93 67.7
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.4e-26 123.2 122 56.6
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 1.4e-26 123.2 79 73.4
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 1.8e-26 122.9 116 58.6
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 2.3e-26 122.5 109 57.8
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 5.2e-26 121.3 112 59.8
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 5.2e-26 121.3 119 56.3
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 6.8e-26 120.9 104 60.6
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 6.8e-26 120.9 127 52.8
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 6.8e-26 120.9 112 59.8
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 8.9e-26 120.6 121 56.2
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 8.9e-26 120.6 126 52.4
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.5e-25 119.8 121 55.4
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 1.5e-25 119.8 114 56.1
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 2.0e-25 119.4 120 53.3
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 3.4e-25 118.6 114 57.0
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 3.4e-25 118.6 114 57.0
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 3.4e-25 118.6 114 57.0
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 3.4e-25 118.6 116 56.0
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 4.4e-25 118.2 121 53.7
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 4.4e-25 118.2 114 57.0
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 4.4e-25 118.2 118 50.8
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 5.8e-25 117.9 109 58.7
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 7.5e-25 117.5 121 54.5
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 7.5e-25 117.5 112 57.1
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 9.8e-25 117.1 116 56.0
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 9.8e-25 117.1 88 65.9
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 9.8e-25 117.1 113 57.5
FAN09G3807 Fragaria x ananassa HOM05D004224 ORTHO05D006437 9.8e-25 117.1 113 54.9
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 9.8e-25 117.1 121 53.7
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 2.2e-24 115.9 120 55.8
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 2.2e-24 115.9 120 53.3
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 2.2e-24 115.9 88 64.8
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 2.2e-24 115.9 112 55.4
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 2.2e-24 115.9 120 53.3
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 2.9e-24 115.5 118 54.2
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 3.7e-24 115.2 112 57.1
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 3.7e-24 115.2 123 49.6
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 4.9e-24 114.8 97 61.9
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 4.9e-24 114.8 119 55.5
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 6.4e-24 114.4 81 71.6
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 8.3e-24 114.0 113 55.8
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 8.3e-24 114.0 118 53.4
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 8.3e-24 114.0 112 56.2
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 1.1e-23 113.6 133 50.4
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 1.1e-23 113.6 119 52.1
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 1.1e-23 113.6 84 66.7
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 1.4e-23 113.2 95 58.9
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 1.4e-23 113.2 87 66.7
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 1.4e-23 113.2 67 79.1
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.4e-23 113.2 83 68.7
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 1.4e-23 113.2 83 68.7
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 1.9e-23 112.8 114 56.1
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 1.9e-23 112.8 120 53.3
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 4.1e-23 111.7 120 52.5
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.4e-23 111.3 129 50.4
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 5.4e-23 111.3 118 49.2
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 7.0e-23 110.9 67 76.1
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 7.0e-23 110.9 67 77.6
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 7.0e-23 110.9 115 55.7
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 1.2e-22 110.2 82 67.1
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.6e-22 109.8 67 74.6
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 1.6e-22 109.8 67 71.6
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 2.0e-22 109.4 67 76.1
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 2.0e-22 109.4 67 76.1
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 7.8e-22 107.5 118 46.6
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 1.3e-21 106.7 69 73.9
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 1.7e-21 106.3 116 53.4
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 3.9e-21 105.1 115 49.6
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 5.6e-20 101.3 93 55.9
BolC7t41056H Brassica oleracea HOM05D004224 ORTHO05D006437 1.4e-15 86.7 85 54.1
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 3.5e-14 82.0 106 40.6
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 2.3e-13 79.3 67 52.2
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 5.1e-13 78.2 57 64.9
SMO358G0584 Selaginella moellendorffii HOM05D004224 ORTHO05D006437 5.6e-12 74.7 70 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.8e-10 69.7 104 36.5
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 6.8e-10 67.8 38 86.8
MD09G1129500 Malus domestica HOM05D004224 ORTHO05D006437 4.4e-09 65.1 38 84.2
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 5.8e-09 64.7 38 84.2
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 9.9e-09 63.9 38 84.2
BcaB02g11236 Brassica carinata HOM05D004224 ORTHO05D006437 3.7e-08 62.0 53 64.2
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 1.9e-07 59.7 40 60.0
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.9e-07 59.7 40 60.0
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 4.1e-07 58.5 40 57.5
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 4.1e-07 58.5 46 56.5
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 4.1e-07 58.5 40 57.5
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 1.2e-06 57.0 40 55.0
TAR517G0001 Trochodendron aralioides HOM05D004224 ORTHO05D016135 1.6e-06 56.6 88 42.0
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 2.1e-06 56.2 40 55.0
BcaB04g18901 Brassica carinata HOM05D004224 ORTHO05D006437 7.8e-06 54.3 38 71.1
BcaC03g16709 Brassica carinata HOM05D004224 ORTHO05D006437 7.8e-06 54.3 37 70.3


User provided reference genes

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