Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.0e-89 330.9 163 100.0
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.2e-73 280.0 162 83.3
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 4.3e-71 271.6 163 81.0
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 9.7e-71 270.4 162 79.6
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.2e-68 263.5 162 79.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 3.9e-56 221.9 164 64.0
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.2e-54 216.1 162 64.8
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.0e-51 207.2 167 62.9
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 6.5e-51 204.5 165 61.2
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 2.2e-46 189.5 159 59.1
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 8.5e-43 177.6 176 57.4
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.9e-42 176.4 154 57.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.0e-40 170.6 167 55.7
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.0e-40 170.6 168 53.0
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 6.7e-40 167.9 175 53.7
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 4.4e-39 165.2 81 98.8
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 6.3e-38 161.4 169 52.7
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 5.5e-34 148.3 171 48.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.4e-32 143.7 158 48.7
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 6.8e-32 141.4 169 44.4
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-31 140.2 156 42.9
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.0e-31 139.8 156 42.9
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 2.6e-31 139.4 78 82.1
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.1e-29 134.0 157 42.7
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.1e-29 132.1 157 42.7
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 5.4e-29 131.7 156 42.9
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 5.4e-29 131.7 156 42.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 7.0e-29 131.3 157 44.6
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 7.0e-29 131.3 170 42.4
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 7.0e-29 131.3 155 44.5
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.2e-28 130.6 155 43.9
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.0e-28 129.8 160 46.9
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.0e-28 129.8 156 40.4
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.7e-28 129.4 166 40.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.7e-28 129.4 156 44.9
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 5.9e-28 128.3 158 46.2
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 5.9e-28 128.3 156 46.2
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 7.7e-28 127.9 156 39.1
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.3e-27 127.1 166 39.2
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.9e-27 125.9 163 46.0
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.9e-27 125.9 156 43.6
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 5.0e-27 125.2 166 41.6
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 6.5e-27 124.8 163 46.0
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 8.6e-27 124.4 156 38.5
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.5e-26 123.6 157 43.9
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.9e-26 123.2 160 45.6
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 3.3e-26 122.5 157 42.7
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.2e-26 122.1 154 43.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 7.2e-26 121.3 156 39.7
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 9.5e-26 120.9 159 44.0
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 9.5e-26 120.9 156 39.7
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.6e-25 120.2 153 45.8
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.6e-25 120.2 156 38.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.1e-25 119.8 156 41.0
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.8e-25 119.4 156 42.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 4.7e-25 118.6 156 38.5
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.1e-25 118.2 160 45.0
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 6.1e-25 118.2 158 39.9
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.0e-24 117.5 145 40.0
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.4e-24 117.1 151 41.7
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-24 117.1 157 37.6
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.4e-24 117.1 157 45.2
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.8e-24 116.7 157 36.9
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.8e-24 116.7 156 39.7
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.0e-24 115.9 157 39.5
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 4.0e-24 115.5 157 36.9
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.2e-24 115.2 156 39.1
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 6.8e-24 114.8 151 39.7
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 8.9e-24 114.4 149 40.3
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 8.9e-24 114.4 159 42.8
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-23 114.0 157 37.6
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.0e-23 113.2 156 38.5
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.6e-23 112.8 148 42.6
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.4e-23 112.5 157 38.9
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 5.7e-23 111.7 156 41.7
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 7.5e-23 111.3 167 38.3
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.3e-22 110.5 156 38.5
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 2.8e-22 109.4 154 41.6
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 6.3e-22 108.2 166 39.2
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.8e-21 106.7 162 39.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.1e-21 105.9 151 39.7
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 3.1e-21 105.9 165 40.6
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 4.1e-21 105.5 158 37.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 5.4e-21 105.1 156 41.7
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 7.0e-21 104.8 153 41.8
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 7.0e-21 104.8 156 35.9
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 9.2e-21 104.4 165 41.2
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.7e-20 102.8 172 37.2
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.7e-20 102.8 172 37.2
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 2.7e-20 102.8 172 37.2
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 2.7e-20 102.8 172 37.2
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 5.9e-20 101.7 156 35.9
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 7.8e-20 101.3 172 36.6
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.3e-19 99.8 153 36.6
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 5.0e-19 98.6 154 39.0
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 5.0e-19 98.6 136 40.4
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.1e-18 97.4 170 35.3
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.9e-18 96.7 145 36.6
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 3.3e-18 95.9 155 38.7
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 4.3e-18 95.5 155 36.1
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 4.3e-18 95.5 156 35.9
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 9.5e-18 94.4 162 39.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.2e-17 94.0 143 38.5
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-17 93.6 149 34.9
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-17 93.6 149 34.9
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.8e-17 92.8 156 32.7
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.8e-17 92.8 173 34.1
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.6e-17 92.4 120 39.2
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 6.1e-17 91.7 163 36.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 6.1e-17 91.7 161 37.9
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 8.0e-17 91.3 121 40.5
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.3e-16 89.7 164 39.0
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.3e-16 89.7 154 38.3
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-16 89.7 149 33.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 4.0e-16 89.0 148 35.1
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.2e-16 88.6 67 61.2
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 8.9e-16 87.8 157 35.0
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-15 87.4 150 35.3
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.2e-15 87.4 167 37.7
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.6e-15 86.3 172 34.3
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 5.8e-15 85.1 154 33.8
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 7.5e-15 84.7 102 38.2
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.7e-14 83.6 169 33.7
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 3.7e-14 82.4 154 33.8
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 6.4e-14 81.6 158 32.9
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.8e-13 80.1 140 34.3
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-13 79.7 171 32.2
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 3.2e-13 79.3 164 36.6
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.5e-12 75.9 77 45.5
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 7.8e-12 74.7 98 42.9
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 7.3e-10 68.2 153 32.7
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 6.2e-09 65.1 96 40.6
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 8.0e-09 64.7 148 33.8
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 7.5e-07 58.2 80 36.2


User provided reference genes

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