Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 3.0e-226 788.1 380 100.0
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.1e-187 659.1 382 85.6
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 2.1e-187 659.1 360 87.5
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 6.2e-163 577.8 364 76.1
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.7e-160 569.7 367 76.6
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.6e-158 563.1 382 72.8
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 3.9e-157 558.5 378 73.3
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.9e-156 556.2 386 71.5
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-139 499.6 398 64.8
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.4e-138 496.9 405 63.7
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 2.0e-137 493.0 358 67.6
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.9e-127 459.9 355 63.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.1e-122 444.1 381 59.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 3.4e-121 439.1 356 61.0
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.4e-119 433.7 362 58.3
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.3e-117 427.2 357 56.9
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 6.7e-117 424.9 378 57.1
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.5e-116 423.7 353 58.9
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.5e-116 422.9 363 58.1
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 3.3e-116 422.5 354 59.3
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.5e-113 413.7 345 58.3
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 2.0e-113 413.3 375 56.3
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 3.8e-112 409.1 363 59.0
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 8.5e-112 407.9 345 57.1
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 5.5e-111 405.2 373 55.5
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 5.5e-111 405.2 359 57.7
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.4e-111 404.4 368 56.0
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 4.6e-110 402.1 367 55.6
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.0e-109 399.4 380 53.4
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.5e-108 397.1 371 53.1
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.7e-108 395.2 333 58.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 9.7e-108 394.4 333 58.9
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.7e-107 393.7 379 56.2
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.1e-106 391.0 343 55.1
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 2.9e-104 382.9 370 51.6
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 5.0e-104 382.1 366 53.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.1e-103 380.9 379 54.1
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.4e-103 380.6 364 54.4
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 1.9e-103 380.2 198 92.9
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.9e-103 380.2 364 53.8
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.9e-103 380.2 372 54.3
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 2.5e-103 379.8 368 53.8
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 4.2e-103 379.0 339 57.5
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 9.4e-103 377.9 369 53.7
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 1.0e-101 374.4 336 54.8
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.8e-101 373.6 359 52.9
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 8.8e-101 371.3 372 51.3
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.1e-100 370.9 330 54.2
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-100 370.9 304 58.6
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.5e-100 370.5 330 54.5
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 3.3e-100 369.4 330 54.5
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 3.3e-100 369.4 330 54.5
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 5.7e-100 368.6 330 54.2
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.7e-99 367.1 351 54.4
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 4.8e-99 365.5 361 51.5
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.1e-98 364.4 368 50.3
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 1.4e-98 364.0 354 53.1
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 3.1e-98 362.8 364 50.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 5.3e-98 362.1 339 52.5
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.2e-97 360.9 368 49.7
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 2.0e-97 360.1 342 52.0
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 2.6e-97 359.8 323 52.9
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 3.5e-97 359.4 381 48.3
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 2.9e-96 356.3 362 48.9
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 5.0e-96 355.5 342 53.5
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 5.0e-96 355.5 358 52.8
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.1e-95 354.4 417 47.0
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 2.5e-95 353.2 354 54.0
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 4.7e-94 349.0 325 52.6
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 4.7e-94 349.0 342 51.8
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.8e-93 347.1 334 53.6
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 3.0e-93 346.3 373 48.5
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 2.0e-92 343.6 334 50.6
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 2.6e-92 343.2 360 51.4
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 4.8e-91 339.0 342 49.7
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-90 337.8 388 48.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 5.9e-89 332.0 368 49.5
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 5.0e-88 328.9 360 49.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 5.5e-87 325.5 316 49.7
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.7e-86 322.4 356 49.2
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.0e-85 319.7 365 46.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 8.2e-83 311.6 317 46.4
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.4e-82 310.8 359 46.2
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.8e-82 310.5 316 46.5
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 3.8e-80 302.8 308 49.7
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 3.2e-79 299.7 286 52.1
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 9.4e-79 298.1 242 57.9
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 7.5e-76 288.5 322 45.3
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.0e-72 278.1 469 36.5
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 1.2e-70 271.2 376 42.8
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 4.7e-70 269.2 254 51.2
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 5.2e-69 265.8 340 39.1
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 7.0e-66 255.4 295 44.7
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 1.2e-57 228.0 197 53.8
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.0e-57 225.7 242 47.1
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.7e-56 224.2 180 60.0
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 7.3e-55 218.8 315 38.7
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 7.3e-55 218.8 298 38.9
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 2.8e-54 216.9 371 35.3
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.5e-52 211.1 298 44.6
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 2.5e-47 193.7 221 46.2
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-47 193.7 211 45.5
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.2e-44 184.9 231 45.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 1.0e-40 171.8 201 47.8
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.9e-39 167.5 131 67.2
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 1.3e-35 154.8 272 33.5
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-35 154.8 304 33.9
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.6e-33 146.4 134 55.2
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 6.4e-27 125.9 129 43.4
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 3.0e-24 117.1 196 32.7
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.6e-22 110.2 211 34.1
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 8.1e-22 109.0 113 53.1
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 9.9e-20 102.1 92 47.8
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-17 94.4 126 45.2
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.0e-16 92.0 240 29.2
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.0e-16 90.5 86 45.3
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 3.0e-16 90.5 112 41.1
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.3e-14 85.1 69 50.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.8e-14 84.0 72 48.6
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 1.3e-06 58.5 56 48.2


User provided reference genes

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