Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 5.3e-116 421.4 272 100.0
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 3.8e-66 255.8 260 68.1
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 2.1e-64 250.0 227 67.0
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.7e-53 212.6 312 55.8
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 8.3e-53 211.5 252 59.1
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 7.8e-51 204.9 262 56.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.5e-46 190.7 259 54.1
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 2.2e-45 186.8 253 51.8
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 3.7e-45 186.0 264 52.3
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.1e-44 184.5 180 65.0
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 1.6e-43 180.6 255 55.7
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 5.1e-42 175.6 253 47.0
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.5e-41 174.1 269 45.4
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 3.4e-38 162.9 256 45.3
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 5.8e-38 162.2 252 46.8
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 5.8e-38 162.2 252 46.8
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 5.8e-38 162.2 255 45.9
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.3e-37 161.0 250 44.8
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 2.9e-37 159.8 252 46.0
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.8e-37 159.5 233 48.1
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 4.9e-37 159.1 233 48.1
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 4.9e-37 159.1 246 45.5
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 7.1e-36 155.2 258 45.0
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 4.6e-35 152.5 267 42.7
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 1.0e-34 151.4 233 46.8
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 1.0e-34 151.4 237 46.8
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.7e-34 150.6 248 44.8
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 3.9e-34 149.4 255 44.3
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 5.1e-34 149.1 248 42.3
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 1.1e-33 147.9 263 42.2
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.9e-33 147.1 236 42.8
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 2.5e-33 146.7 252 43.3
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 2.5e-33 146.7 233 42.9
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.1e-32 143.7 261 42.9
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.8e-32 143.3 249 44.6
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 6.2e-32 142.1 236 46.6
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 6.2e-32 142.1 247 43.7
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 8.1e-32 141.7 246 44.3
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 8.9e-31 138.3 233 42.1
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 1.2e-30 137.9 212 45.8
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 1.5e-30 137.5 237 43.5
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 2.6e-30 136.7 232 43.1
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 3.4e-30 136.3 231 42.4
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 7.6e-30 135.2 258 42.6
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.7e-29 134.0 233 42.5
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 3.8e-29 132.9 230 42.6
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.8e-29 132.9 253 41.5
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 4.9e-29 132.5 254 47.2
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 8.4e-29 131.7 266 40.2
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 7.1e-28 128.6 270 38.5
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 1.6e-27 127.5 250 39.6
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 3.0e-26 123.2 250 40.4
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 3.0e-26 123.2 258 39.1
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 6.6e-26 122.1 231 42.0
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 1.1e-25 121.3 246 40.7
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 4.3e-25 119.4 266 35.3
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.8e-24 116.7 234 41.0
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 2.8e-24 116.7 261 37.2
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 4.8e-24 115.9 247 37.2
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 8.1e-24 115.2 256 40.2
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.8e-23 114.0 237 39.7
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 4.0e-23 112.8 236 39.0
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 4.0e-23 112.8 253 42.7
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 2.0e-22 110.5 247 37.2
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 1.3e-21 107.8 260 38.1
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 1.3e-21 107.8 246 36.6
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.2e-21 107.1 250 35.6
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 3.8e-21 106.3 201 40.8
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 6.4e-21 105.5 269 36.1
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.4e-20 104.4 269 35.7
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 2.4e-20 103.6 269 34.9
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 2.4e-20 103.6 234 35.9
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 2.7e-19 100.1 131 49.6
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 1.8e-18 97.4 228 37.7
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 1.8e-18 97.4 172 39.0
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 4.3e-17 92.8 264 31.8
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 2.8e-16 90.1 142 43.0
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 1.8e-15 87.4 244 34.4
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 5.3e-15 85.9 257 32.3
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 2.9e-13 80.1 68 69.1
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 4.9e-13 79.3 128 44.5
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 4.9e-13 79.3 128 44.5
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 6.4e-13 79.0 191 37.2
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 6.4e-13 79.0 191 37.2
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 8.4e-13 78.6 258 34.1
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 2.4e-12 77.0 144 46.5
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 4.2e-12 76.3 245 35.5
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 9.3e-12 75.1 236 31.4
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 2.7e-11 73.6 247 34.4
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 3.5e-11 73.2 204 33.8
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 3.5e-11 73.2 250 32.4
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 6.0e-11 72.4 234 32.5
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 6.0e-11 72.4 231 30.3
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 5.6e-09 65.9 137 39.4
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.3e-08 64.7 110 46.4
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 1.1e-07 61.6 137 36.5
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 4.0e-07 59.7 247 29.1
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 5.3e-07 59.3 122 41.8
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.2e-06 58.2 255 27.8
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 2.0e-06 57.4 30 90.0
Os12g0182100 Oryza sativa ssp. japonica HOM05D052999 ORTHO05D049891 2.6e-06 57.0 197 29.9


User provided reference genes

Program Settings