Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 6.0e-107 391.3 278 100.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.5e-73 279.6 282 81.6
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.5e-62 243.8 297 77.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.6e-49 199.9 291 70.1
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.0e-46 190.3 287 65.2
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 4.0e-42 176.0 295 66.4
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.8e-42 175.3 203 54.7
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.2e-41 174.5 292 64.0
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.7e-41 172.2 290 64.5
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.8e-40 169.9 293 66.2
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.8e-40 169.1 285 64.6
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-39 167.9 294 57.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.4e-39 166.8 288 62.2
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.1e-39 166.4 294 64.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 4.1e-39 166.0 288 62.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.0e-39 165.2 291 63.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 9.1e-39 164.9 305 62.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.0e-38 163.7 280 60.4
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 3.5e-38 162.9 286 62.2
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.9e-38 162.2 286 62.9
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 7.7e-38 161.8 285 62.8
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.0e-37 161.4 291 63.2
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.7e-37 160.6 306 61.1
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.2e-37 160.2 291 61.2
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.5e-37 158.7 195 55.4
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 8.5e-37 158.3 286 61.5
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-36 157.9 302 61.3
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.5e-36 157.5 290 61.0
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-36 157.5 306 61.4
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-36 157.5 285 54.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.5e-36 156.8 290 61.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.2e-36 156.4 293 62.5
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.2e-36 156.4 285 63.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 4.2e-36 156.0 286 62.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.2e-36 156.0 293 61.8
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 5.5e-36 155.6 294 61.9
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.2e-35 154.5 288 61.1
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-35 154.5 304 60.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-35 154.1 304 60.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.6e-35 154.1 304 60.2
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-35 154.1 280 63.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.1e-35 153.7 293 61.8
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.7e-35 153.3 302 61.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-35 153.3 302 61.3
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.7e-35 153.3 284 62.0
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.7e-35 152.5 293 62.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 6.1e-35 152.1 274 59.9
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 8.0e-35 151.8 305 61.3
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.0e-35 151.8 285 61.4
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.0e-34 151.4 303 58.7
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.4e-34 151.0 202 49.0
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.3e-34 150.2 300 45.3
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 3.0e-34 149.8 324 57.7
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.0e-34 149.8 286 48.6
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.2e-34 149.1 272 62.5
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.2e-34 149.1 291 58.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.8e-34 148.3 273 64.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.0e-33 147.1 273 64.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 9.8e-33 144.8 207 49.3
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 9.8e-33 144.8 288 61.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.7e-32 144.1 269 62.5
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.7e-32 144.1 269 62.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.7e-32 144.1 286 60.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.7e-32 144.1 280 62.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.8e-32 143.3 268 63.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.8e-32 143.3 282 62.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.8e-32 142.5 205 52.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.8e-32 142.5 284 63.0
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 6.3e-32 142.1 304 56.9
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.3e-32 141.7 289 57.1
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.1e-31 139.4 212 49.5
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 4.1e-31 139.4 284 60.2
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 9.1e-31 138.3 318 55.7
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 9.1e-31 138.3 266 62.8
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.2e-30 137.9 205 50.2
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.6e-30 137.5 305 57.4
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.5e-30 136.0 280 48.9
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 4.5e-30 136.0 235 66.4
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.7e-30 135.2 225 71.1
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 7.7e-30 135.2 294 60.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 2.3e-29 133.7 265 61.5
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 3.8e-29 132.9 271 62.0
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.8e-29 132.9 267 62.9
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.9e-28 130.6 259 64.1
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.2e-27 127.9 244 63.5
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.1e-27 127.1 296 56.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.1e-27 127.1 304 56.2
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.6e-27 126.3 284 58.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 3.6e-27 126.3 293 56.0
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 4.7e-27 125.9 279 59.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 4.7e-27 125.9 293 56.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.7e-27 125.9 195 47.7
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 8.0e-27 125.2 267 61.8
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.4e-26 124.4 166 86.1
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.0e-26 123.2 281 48.4
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 4.0e-26 122.9 318 53.8
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.2e-26 122.5 277 59.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-25 121.3 200 43.5
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.0e-25 120.6 274 57.7
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.0e-25 120.6 151 51.7
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 4.4e-25 119.4 199 44.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.7e-24 117.5 287 56.4
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.7e-24 117.5 260 56.9
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.7e-24 117.5 287 56.4
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.7e-24 117.5 287 56.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.7e-24 117.5 285 53.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.8e-24 116.7 276 55.4
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 6.3e-24 115.5 301 54.5
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 6.3e-24 115.5 220 40.9
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.3e-24 115.5 281 56.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 8.3e-24 115.2 277 55.6
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 8.3e-24 115.2 301 50.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-23 114.8 290 55.9
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.8e-23 114.0 291 54.0
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.8e-23 114.0 290 55.2
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.8e-23 114.0 286 58.0
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.8e-23 114.0 298 57.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.8e-23 114.0 265 58.5
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.4e-23 113.6 274 57.3
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 4.1e-23 112.8 269 50.2
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.1e-23 112.8 284 56.7
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.4e-23 112.5 280 58.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 7.0e-23 112.1 299 54.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-22 111.3 292 55.5
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.2e-22 111.3 279 45.5
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.2e-22 111.3 279 45.5
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.6e-22 110.9 279 53.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.6e-22 110.9 279 53.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.6e-22 110.9 184 45.7
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.7e-22 110.2 274 55.1
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.7e-21 107.5 308 49.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.0e-21 105.9 270 55.9
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.1e-20 104.8 296 55.1
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.3e-20 103.2 291 30.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 4.3e-20 102.8 233 45.9
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.3e-20 102.8 296 44.6
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 7.3e-20 102.1 264 45.8
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 9.5e-20 101.7 275 56.0
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.1e-19 100.5 288 52.8
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 6.1e-19 99.0 281 53.4
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 8.0e-19 98.6 308 38.0
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.0e-18 98.2 285 52.6
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.3e-18 97.1 265 52.1
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.3e-18 97.1 260 58.5
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 2.3e-18 97.1 138 47.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.1e-18 96.7 308 53.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.8e-18 95.5 284 49.3
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 8.9e-18 95.1 224 36.6
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.6e-17 93.6 282 51.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.7e-16 90.9 283 54.8
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.2e-16 90.5 283 48.4
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.9e-16 90.1 283 53.7
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.7e-16 89.7 189 38.6
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.9e-16 89.4 137 46.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.0e-14 84.0 197 36.5
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 3.5e-14 83.2 279 51.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 9.5e-12 75.1 289 39.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.1e-11 73.9 151 47.0
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 3.6e-11 73.2 260 34.2
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.2e-09 68.2 285 46.7
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 3.4e-09 66.6 265 45.7
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.4e-09 66.2 59 61.0
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 6.4e-08 62.4 255 48.6
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.4e-07 61.2 119 43.7
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.4e-07 60.5 98 43.9
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 3.2e-07 60.1 89 48.3
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 4.1e-07 59.7 117 82.9
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 7.1e-07 58.9 62 51.6


User provided reference genes

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