Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 5.2e-34 147.1 73 100.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 5.0e-13 77.4 55 76.4
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.9e-12 75.5 55 72.7
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.2e-09 66.2 55 61.8
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 2.0e-09 65.5 55 60.0
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 2.6e-09 65.1 55 60.0
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 3.4e-09 64.7 55 61.8
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 3.4e-09 64.7 55 61.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 3.4e-09 64.7 55 63.6
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 5.8e-09 63.9 55 61.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.8e-09 63.9 55 61.8
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 5.8e-09 63.9 55 58.2
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 5.8e-09 63.9 55 58.2
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 9.8e-09 63.2 55 60.0
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 9.8e-09 63.2 55 60.0
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 9.8e-09 63.2 55 60.0
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 9.8e-09 63.2 55 61.8
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 9.8e-09 63.2 55 60.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.3e-08 62.8 55 63.6
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.7e-08 62.4 52 61.5
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.7e-08 62.4 55 61.8
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.9e-08 61.6 55 60.0
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.9e-08 61.6 55 60.0
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.9e-08 61.6 52 59.6
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.9e-08 61.6 50 68.0
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.9e-08 60.8 55 58.2
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.9e-08 60.8 52 59.6
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 4.9e-08 60.8 55 63.6
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 4.9e-08 60.8 55 60.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 4.9e-08 60.8 55 60.0
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 6.4e-08 60.5 55 58.2
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 6.4e-08 60.5 55 58.2
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 6.4e-08 60.5 55 58.2
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.4e-08 60.5 55 60.0
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.4e-08 60.5 55 60.0
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 8.3e-08 60.1 53 60.4
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 8.3e-08 60.1 55 58.2
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 8.3e-08 60.1 53 60.4
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 8.3e-08 60.1 53 60.4
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 8.3e-08 60.1 53 60.4
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.1e-07 59.7 52 59.6
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.1e-07 59.7 52 59.6
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.1e-07 59.7 55 60.0
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.1e-07 59.7 55 58.2
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.4e-07 59.3 55 56.4
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.4e-07 59.3 55 61.8
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.4e-07 59.3 55 60.0
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.4e-07 59.3 55 56.4
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.9e-07 58.9 55 56.4
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.9e-07 58.9 55 56.4
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.9e-07 58.9 52 57.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.9e-07 58.9 52 57.7
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.9e-07 58.9 55 61.8
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.9e-07 58.9 55 60.0
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.4e-07 58.5 55 56.4
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 2.4e-07 58.5 55 56.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 2.4e-07 58.5 52 59.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.4e-07 58.5 55 58.2
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 3.2e-07 58.2 53 56.6
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.2e-07 58.2 55 56.4
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 3.2e-07 58.2 52 59.6
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.2e-07 58.2 53 56.6
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 3.2e-07 58.2 55 60.0
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 4.1e-07 57.8 55 58.2
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 4.1e-07 57.8 55 61.8
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 5.4e-07 57.4 55 58.2
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.4e-07 57.4 55 54.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 5.4e-07 57.4 55 58.2
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 5.4e-07 57.4 51 58.8
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 7.0e-07 57.0 55 60.0
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.0e-07 57.0 55 60.0
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.0e-07 57.0 55 60.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 7.0e-07 57.0 55 60.0
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 9.2e-07 56.6 64 50.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 9.2e-07 56.6 50 60.0
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.2e-06 56.2 55 52.7
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.2e-06 56.2 67 50.7
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.6e-06 55.8 55 52.7
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.6e-06 55.8 55 58.2
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.0e-06 55.5 55 56.4
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.0e-06 55.5 52 55.8
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.7e-06 55.1 55 56.4
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 3.5e-06 54.7 52 55.8
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 3.5e-06 54.7 52 55.8
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 3.5e-06 54.7 52 55.8
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 3.5e-06 54.7 52 55.8
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.5e-06 54.7 50 58.0
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 3.5e-06 54.7 55 56.4
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 4.6e-06 54.3 50 58.0
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 6.0e-06 53.9 55 56.4
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 6.0e-06 53.9 56 55.4
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 6.0e-06 53.9 55 52.7
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 7.8e-06 53.5 53 52.8
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.8e-06 53.5 53 56.6
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.8e-06 53.5 53 56.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 7.8e-06 53.5 53 56.6


User provided reference genes

Program Settings