Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 2.2e-37 158.3 73 100.0
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 2.7e-35 151.4 73 93.2
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.8e-34 148.7 70 94.3
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 2.0e-33 145.2 70 92.9
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.0e-33 145.2 70 92.9
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 3.4e-33 144.4 70 90.0
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 3.4e-33 144.4 70 90.0
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 5.7e-33 143.7 70 90.0
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 5.7e-33 143.7 73 89.0
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 9.7e-33 142.9 70 91.4
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-32 142.1 73 84.9
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-32 142.1 73 84.9
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 6.3e-32 140.2 73 84.9
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 6.3e-32 140.2 70 88.6
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 8.3e-32 139.8 70 87.1
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 8.3e-32 139.8 70 85.7
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.1e-31 139.4 70 85.7
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 1.4e-31 139.0 70 88.6
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 1.8e-31 138.7 70 84.3
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 1.8e-31 138.7 70 84.3
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.8e-31 138.7 70 82.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.4e-31 138.3 70 90.0
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.4e-31 138.3 70 85.7
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 84.3
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 87.1
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 84.3
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 82.9
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 82.9
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 84.3
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 88.6
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 82.9
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 85.7
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 85.7
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.1e-31 137.9 70 85.7
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 4.1e-31 137.5 70 84.3
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 4.1e-31 137.5 70 84.3
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 7.0e-31 136.7 70 82.9
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 9.1e-31 136.3 70 81.4
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.6e-30 135.6 69 84.1
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 2.7e-30 134.8 70 87.1
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 2.7e-30 134.8 70 82.9
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 2.7e-30 134.8 70 82.9
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 3.5e-30 134.4 70 84.3
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 3.5e-30 134.4 70 84.3
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.5e-30 134.4 70 84.3
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 4.5e-30 134.0 70 85.7
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 4.5e-30 134.0 70 82.9
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.5e-30 134.0 70 82.9
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 5.9e-30 133.7 70 84.3
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 5.9e-30 133.7 70 81.4
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 7.7e-30 133.3 70 78.6
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 1.3e-29 132.5 70 84.3
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.3e-29 132.5 70 82.9
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 3.8e-29 131.0 70 77.1
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.8e-29 131.0 70 80.0
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 3.8e-29 131.0 70 82.9
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 5.0e-29 130.6 70 82.9
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 8.5e-29 129.8 70 78.6
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 8.5e-29 129.8 70 77.1
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.1e-28 129.4 73 79.5
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-28 129.0 66 83.3
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-28 129.0 66 83.3
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 1.9e-28 128.6 70 78.6
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 2.5e-28 128.3 66 81.8
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.5e-28 128.3 70 81.4
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 7.2e-28 126.7 70 80.0
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 9.4e-28 126.3 70 80.0
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 80.0
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.6e-27 125.6 69 82.6
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 78.6
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 75.7
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 4.7e-27 124.0 73 76.7
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 6.1e-27 123.6 70 74.3
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 8.0e-27 123.2 70 74.3
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.0e-26 122.9 70 74.3
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.8e-26 120.2 105 55.2
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.8e-26 119.8 105 54.3
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.8e-26 119.8 70 72.9
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 4.4e-25 117.5 70 74.3
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 5.7e-25 117.1 66 74.2
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 1.3e-24 115.9 61 85.2
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 1.7e-24 115.5 56 94.6
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 2.2e-24 115.2 57 91.2
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 6.3e-24 113.6 67 76.1
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 4.1e-23 110.9 66 71.2
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 4.1e-23 110.9 70 70.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 5.4e-23 110.5 113 51.3
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 7.0e-23 110.2 56 87.5
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.2e-22 109.4 59 78.0
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.6e-22 109.0 56 82.1
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.6e-22 109.0 56 85.7
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 2.0e-22 108.6 56 82.1
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 2.0e-22 108.6 56 82.1
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 2.0e-22 108.6 56 82.1
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.0e-22 108.6 57 78.9
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 3.5e-22 107.8 56 82.1
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 3.5e-22 107.8 56 82.1
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.5e-22 107.8 56 83.9
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 3.5e-22 107.8 56 83.9
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.5e-22 107.8 56 80.4
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 3.5e-22 107.8 68 67.6
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 5.9e-22 107.1 56 83.9
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 5.9e-22 107.1 56 83.9
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 5.9e-22 107.1 56 85.7
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.9e-22 107.1 56 85.7
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 7.7e-22 106.7 56 82.1
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 1.3e-21 105.9 56 87.5
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.8e-21 104.4 56 78.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 5.0e-21 104.0 56 83.9
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 3.3e-20 101.3 56 80.4
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 7.2e-20 100.1 52 80.8
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.6e-19 99.0 56 82.1
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 6.1e-19 97.1 52 80.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.4e-18 95.9 70 62.9
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.3e-18 95.1 55 76.4
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 4.0e-18 94.4 49 79.6
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 2.0e-17 92.0 56 71.4
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.0e-17 92.0 68 61.8
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 5.7e-17 90.5 70 60.0
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 8.3e-16 86.7 44 86.4
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.0e-14 82.0 56 69.6
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 7.8e-14 80.1 66 56.1
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 7.8e-14 80.1 50 72.0
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 8.6e-13 76.6 48 72.9
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 8.6e-13 76.6 65 55.4
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.3e-12 74.7 70 44.3
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 3.1e-10 68.2 70 45.7
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.2e-10 67.4 56 50.0
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 6.8e-10 67.0 50 62.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 3.7e-08 61.2 33 84.8


User provided reference genes

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