Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21326 Trifolium pratense HOM05D007653 ORTHO05D009670 2.9e-154 548.5 278 100.0
Ca_07676_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 2.0e-110 402.9 278 73.4
Medtr7g069710 Medicago truncatula HOM05D007653 ORTHO05D009670 2.9e-109 399.1 276 77.2
Glyma.07G154000 Glycine max HOM05D007653 ORTHO05D009670 6.7e-82 308.1 275 65.5
VMungo1383G1231 Vigna mungo HOM05D007653 ORTHO05D009670 1.5e-70 270.4 268 59.0
Lj3g0004323 Lotus japonicus HOM05D007653 ORTHO05D009670 2.2e-69 266.5 267 58.4
Glyma.03G051200 Glycine max HOM05D007653 ORTHO05D009670 3.8e-69 265.8 263 58.2
Glyma.01G124000 Glycine max HOM05D007653 ORTHO05D009670 6.5e-69 265.0 263 59.7
Phvul.008G094700 Phaseolus vulgaris HOM05D001497 ORTHO05D001707 1.0e-66 257.7 241 62.7
Lalb_Chr01g0023261 Lupinus albus HOM05D007653 ORTHO05D009670 2.0e-65 253.4 313 49.5
Phvul.010G060900 Phaseolus vulgaris HOM05D007653 ORTHO05D009670 4.2e-60 235.7 259 56.0
VMungo0331G0216 Vigna mungo HOM05D007653 ORTHO05D009670 1.0e-58 231.1 264 53.8
Lalb_Chr12g0207101 Lupinus albus HOM05D007653 ORTHO05D009670 2.3e-58 229.9 276 54.3
Manes.09G109500 Manihot esculenta HOM05D007653 ORTHO05D009670 7.4e-49 198.4 266 45.9
CiPaw.10G159500 Carya illinoinensis HOM05D007653 ORTHO05D009670 5.3e-47 192.2 263 48.3
Medtr4g014670 Medicago truncatula HOM05D007653 ORTHO05D009670 1.3e-45 187.6 275 47.3
Cfa017149 Carpinus fangiana HOM05D007653 ORTHO05D009670 3.8e-45 186.0 276 46.7
TPR.G5265 Trifolium pratense HOM05D007653 ORTHO05D009670 7.2e-44 181.8 275 46.9
Psat7g247360 Pisum sativum HOM05D007653 ORTHO05D009670 2.7e-43 179.9 273 46.9
QL07p034260 Quercus lobata HOM05D007653 ORTHO05D009670 5.7e-41 172.2 269 45.0
arahy.Tifrunner.gnm1.ann1.4LI2NJ Arachis hypogaea HOM05D007653 ORTHO05D009670 4.8e-40 169.1 255 45.9
Prupe.6G282500 Prunus persica HOM05D007653 ORTHO05D009670 1.2e-38 164.5 275 43.3
Potri.016G123700 Populus trichocarpa HOM05D007653 ORTHO05D009670 1.6e-38 164.1 285 41.4
Duzib093G1250 Durio zibethinus HOM05D007653 ORTHO05D009670 2.0e-38 163.7 274 39.1
Gohir.D01G218900 Gossypium hirsutum HOM05D007653 ORTHO05D009670 2.0e-38 163.7 258 42.2
Gorai.002G265600 Gossypium raimondii HOM05D007653 ORTHO05D009670 2.0e-38 163.7 258 42.2
Gohir.A01G229000 Gossypium hirsutum HOM05D007653 ORTHO05D009670 3.5e-38 162.9 257 41.2
FAN05G3332 Fragaria x ananassa HOM05D007653 ORTHO05D009670 2.2e-37 160.2 281 44.5
Thecc.05G009700 Theobroma cacao HOM05D007653 ORTHO05D009670 2.5e-36 156.8 273 39.9
RcHm_v2.0_Chr3g0462281 Rosa chinensis HOM05D007653 ORTHO05D009670 2.1e-35 153.7 275 43.3
FAN14G3858 Fragaria x ananassa HOM05D001497 ORTHO05D001619 4.7e-35 152.5 254 45.3
Ciclev10012426m.g Citrus clementina HOM05D007653 ORTHO05D009670 3.0e-34 149.8 281 40.2
Oeu057628.1 Olea europaea HOM05D007653 ORTHO05D009670 4.0e-34 149.4 239 43.1
Dinv08443 Davidia involucrata HOM05D007653 ORTHO05D009670 5.2e-34 149.1 278 41.4
Atru.chr8.2298 Acer truncatum HOM05D007653 ORTHO05D009670 3.4e-33 146.4 290 38.3
Sabra16G0118500 Salix brachista HOM05D007653 ORTHO05D009670 3.4e-33 146.4 276 39.5
TAR369G0435 Trochodendron aralioides HOM05D007653 ORTHO05D009670 5.7e-33 145.6 253 41.9
MD04G1163000 Malus domestica HOM05D007653 ORTHO05D009670 2.8e-32 143.3 278 41.0
Actinidia20753 Actinidia chinensis HOM05D007653 ORTHO05D009670 8.3e-32 141.7 257 40.5
COL.COLO4_14486 Corchorus olitorius HOM05D007653 ORTHO05D009670 1.8e-31 140.6 279 38.7
TWI74G0740 Tripterygium wilfordii HOM05D007653 ORTHO05D009670 9.1e-31 138.3 266 39.5
DCAR_028874 Daucus carota HOM05D007653 ORTHO05D009670 5.5e-28 129.0 239 39.7
Cpa.g.sc120.35 Carica papaya HOM05D007653 ORTHO05D009670 1.6e-27 127.5 259 37.1
MELO3C026011.2 Cucumis melo HOM05D007653 ORTHO05D009670 2.1e-27 127.1 279 38.7
Ca_20332_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 6.1e-27 125.6 219 42.9
Sed0001003 Sechium edule HOM05D007653 ORTHO05D009670 3.0e-26 123.2 269 36.8
Haze_21051 Corylus avellana HOM05D007653 ORTHO05D009670 4.0e-26 122.9 272 34.6
Actinidia32531 Actinidia chinensis HOM05D007653 ORTHO05D009670 5.2e-26 122.5 248 37.9
CsaV3_4G026460 Cucumis sativus L. HOM05D007653 ORTHO05D009670 2.6e-25 120.2 279 37.6
ClCG04G006820 Citrullus lanatus HOM05D007653 ORTHO05D009670 5.7e-25 119.0 279 36.9
Aqoxy2G00810 Aquilegia oxysepala HOM05D007653 ORTHO05D009670 2.8e-24 116.7 262 34.7
ECA247G1536 Erigeron canadensis HOM05D007653 ORTHO05D009670 4.9e-24 115.9 245 37.6
Eucgr.K00125 Eucalyptus grandis HOM05D007653 ORTHO05D009670 1.1e-23 114.8 251 37.8
Rhsim04G0175600 Rhododendron simsii HOM05D007653 ORTHO05D009670 4.1e-23 112.8 273 35.9
Solyc09g005020.1 Solanum lycopersicum HOM05D007653 ORTHO05D009670 7.8e-22 108.6 258 34.1
Peaxi162Scf01132g00319 Petunia axillaris HOM05D007653 ORTHO05D009670 2.9e-21 106.7 230 39.1
Migut.L02038 Erythranthe guttata HOM05D007653 ORTHO05D009670 3.9e-21 106.3 252 36.9
Nn2g10953 Nelumbo nucifera HOM05D007653 ORTHO05D009670 8.6e-21 105.1 285 33.0
EL10Ac5g12516 Beta vulgaris HOM05D007653 ORTHO05D009670 1.1e-20 104.8 266 33.5
Sc07g0006490 Simmondsia chinensis HOM05D007653 ORTHO05D009670 2.5e-20 103.6 291 33.7
CAN.G588.49 Capsicum annuum HOM05D007653 ORTHO05D009670 1.6e-19 100.9 268 32.8
PGSC0003DMG400026639 Solanum tuberosum HOM05D007653 ORTHO05D009670 8.0e-19 98.6 282 32.6
AUR62030507 Chenopodium quinoa HOM05D007653 ORTHO05D009670 1.8e-18 97.4 265 32.8
A09p44930 Brassica napus HOM05D007653 ORTHO05D009670 3.1e-18 96.7 253 31.2
BraA09t39952Z Brassica rapa HOM05D007653 ORTHO05D009670 3.1e-18 96.7 253 31.2
CARHR161390 Cardamine hirsuta HOM05D007653 ORTHO05D009670 3.1e-18 96.7 264 32.2
Lsat_1_v5_gn_9_37441 Lactuca sativa HOM05D007653 ORTHO05D009670 5.2e-18 95.9 239 39.3
Aa31sc892G20 Aethionema arabicum HOM05D007653 ORTHO05D009670 8.9e-18 95.1 259 30.9
Nitab4.5_0009553g0030 Nicotiana tabacum HOM05D007653 ORTHO05D009670 8.9e-18 95.1 250 33.2
AT3G51760 Arabidopsis thaliana HOM05D007653 ORTHO05D009670 1.2e-17 94.7 266 32.3
BcaB01g00481 Brassica carinata HOM05D007653 ORTHO05D009670 1.2e-17 94.7 265 32.5
C08p26990 Brassica napus HOM05D007653 ORTHO05D009670 1.2e-17 94.7 265 32.5
BolC8t50316H Brassica oleracea HOM05D007653 ORTHO05D009670 1.2e-17 94.7 265 32.5
Thhalv10010652m.g Eutrema salsugineum HOM05D007653 ORTHO05D009670 1.2e-17 94.7 266 32.7
Cc06_g00860 Coffea canephora HOM05D007653 ORTHO05D009670 1.5e-17 94.4 309 32.4
Sp5g10510 Schrenkiella parvula HOM05D007653 ORTHO05D009670 2.0e-17 94.0 265 32.1
BcaB01g00421 Brassica carinata HOM05D007653 ORTHO05D009670 2.6e-17 93.6 253 31.2
AL5G32220 Arabidopsis lyrata HOM05D007653 ORTHO05D009670 3.4e-17 93.2 264 31.8
Cc06_g00970 Coffea canephora HOM05D001108 ORTHO05D001619 1.7e-16 90.9 211 37.4
Carub.0005s1811 Capsella rubella HOM05D007653 ORTHO05D009670 2.2e-16 90.5 266 31.6
SGA_v2.0_scaffold110G31197 Striga asiatica HOM05D007653 ORTHO05D009670 2.9e-16 90.1 253 30.4
THA.LOC104806615 Tarenaya hassleriana HOM05D007653 ORTHO05D009670 6.4e-16 89.0 261 32.2
PSO339G6297 Papaver somniferum HOM05D007653 ORTHO05D009670 2.4e-15 87.0 273 30.4
AUR62030786 Chenopodium quinoa HOM05D007653 ORTHO05D009670 4.3e-12 76.3 227 33.5
FAN09G3847 Fragaria x ananassa HOM05D007653 ORTHO05D009670 4.3e-12 76.3 260 32.3
Nn7g37369 Nelumbo nucifera HOM05D007653 ORTHO05D009670 9.5e-12 75.1 197 33.5
FAN02G3974 Fragaria x ananassa HOM05D007653 ORTHO05D009670 4.0e-10 69.7 123 45.5
Aa31LG6G6300 Aethionema arabicum HOM05D002063 ORTHO05D002075 1.5e-09 67.8 203 30.5
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 7.5e-09 65.5 200 32.0
Nn4g22427 Nelumbo nucifera HOM05D007653 ORTHO05D009670 2.2e-08 63.9 95 42.1
Carub.0001s2741 Capsella rubella HOM05D002063 ORTHO05D002075 4.9e-08 62.8 204 28.9
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 1.9e-07 60.8 209 26.8
BraA08t34475Z Brassica rapa HOM05D002063 ORTHO05D002075 7.1e-07 58.9 189 28.6
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 1.2e-06 58.2 234 29.5
Thhalv10007223m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 1.2e-06 58.2 205 30.7
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 1.6e-06 57.8 207 27.5
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 1.6e-06 57.8 207 27.5
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 1.6e-06 57.8 207 28.0
CDE07G0185 Ceratophyllum demersum HOM05D003447 ORTHO05D003967 2.7e-06 57.0 84 40.5
Medtr2g093020 Medicago truncatula HOM05D002063 ORTHO05D002075 3.5e-06 56.6 200 27.5
Nn1g06127 Nelumbo nucifera HOM05D007653 ORTHO05D009670 3.5e-06 56.6 213 29.6
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 4.6e-06 56.2 228 26.8
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 4.6e-06 56.2 215 28.4
vmacro12381 Vaccinium macrocarpon HOM05D002063 ORTHO05D002075 4.6e-06 56.2 213 28.6
BcaB03g13896 Brassica carinata HOM05D002063 ORTHO05D002075 6.0e-06 55.8 188 33.0


User provided reference genes

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