Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 0.0e+00 1326.2 687 100.0
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.6e-249 866.3 704 71.3
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 8.4e-227 790.8 664 70.0
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 7.2e-154 548.5 716 53.1
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.8e-152 543.9 760 51.4
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 3.0e-152 543.1 769 51.4
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 4.4e-151 539.3 737 52.9
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 3.2e-141 506.5 758 50.1
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 6.0e-108 396.0 763 43.3
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 9.0e-104 382.1 702 44.0
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.6e-103 380.6 710 44.8
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.4e-101 374.8 741 42.1
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 7.9e-100 369.0 738 43.0
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 3.3e-98 363.6 757 42.3
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 6.5e-94 349.4 740 41.4
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.4e-93 348.2 740 41.8
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 4.8e-89 333.2 738 40.4
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 5.9e-87 326.2 768 37.8
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.2e-86 324.3 709 40.3
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 2.9e-78 297.4 759 36.4
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.4e-77 295.0 779 37.6
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 7.9e-76 289.3 689 37.0
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 5.1e-75 286.6 683 37.6
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 1.1e-72 278.9 702 36.3
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.4e-72 278.5 746 36.5
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.0e-71 274.6 746 35.7
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.0e-71 274.6 729 36.5
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 1.3e-70 271.9 679 38.4
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.7e-70 271.6 730 37.4
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 3.8e-70 270.4 751 34.9
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 5.0e-70 270.0 754 35.8
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 8.5e-70 269.2 712 36.9
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.9e-69 268.1 752 36.0
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 4.2e-69 266.9 654 38.1
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 5.5e-69 266.5 771 36.3
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 1.6e-68 265.0 771 34.1
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 7.9e-68 262.7 759 36.8
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 3.9e-67 260.4 731 35.6
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.6e-66 257.7 719 36.9
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.3e-66 257.3 748 34.9
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 4.4e-66 256.9 724 35.8
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.7e-66 256.5 715 36.5
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.7e-65 255.0 717 36.3
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.7e-65 255.0 747 33.9
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.7e-65 255.0 288 55.9
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 4.8e-65 253.4 708 35.6
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.3e-65 253.1 708 35.6
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-64 251.5 708 35.6
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.7e-62 245.0 775 37.5
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 3.2e-61 240.7 713 34.8
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.1e-60 238.0 676 33.0
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.0e-59 235.7 766 35.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.0e-59 233.8 756 34.8
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 8.8e-59 232.6 815 33.4
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 4.4e-58 230.3 669 37.1
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 9.7e-58 229.2 706 34.1
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.7e-57 228.4 645 35.3
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 3.7e-57 227.3 708 35.5
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 6.3e-57 226.5 762 35.7
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 1.4e-56 225.3 779 34.3
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.8e-56 224.9 816 32.1
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.8e-56 224.9 754 34.4
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 7.0e-56 223.0 798 32.1
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 4.5e-55 220.3 617 36.6
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 4.5e-55 220.3 754 34.4
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.1e-53 215.7 714 35.9
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.9e-53 214.9 720 32.2
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.2e-53 213.8 720 36.4
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.6e-52 210.7 721 31.1
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 3.6e-52 210.7 718 32.7
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.1e-52 209.9 721 31.3
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 2.3e-51 208.0 520 38.3
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 4.0e-51 207.2 740 33.6
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.0e-50 204.9 668 33.1
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 2.6e-50 204.5 711 32.3
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 3.4e-50 204.1 742 33.6
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 5.7e-50 203.4 713 30.6
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 7.5e-50 203.0 668 33.2
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 4.8e-49 200.3 663 32.6
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-48 199.1 673 33.1
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.4e-48 198.0 702 31.6
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.2e-47 195.7 695 32.2
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 5.9e-47 193.4 665 32.6
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.7e-46 191.8 661 32.2
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 5.0e-46 190.3 668 32.6
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 5.0e-46 190.3 709 32.2
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.1e-45 189.1 740 31.5
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.5e-45 188.7 747 31.7
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.5e-45 188.7 687 29.8
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 9.5e-45 186.0 788 32.6
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.6e-44 185.3 697 32.4
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 2.7e-44 184.5 707 30.8
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 3.6e-44 184.1 710 32.1
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 4.0e-43 180.6 572 34.4
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.8e-43 179.9 700 29.9
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.8e-43 179.9 692 30.8
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 8.8e-43 179.5 674 31.8
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 8.8e-43 179.5 699 30.8
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.2e-42 179.1 666 31.2
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 3.4e-42 177.6 700 31.6
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 3.7e-41 174.1 455 38.5
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 7.0e-40 169.9 728 32.0
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.2e-39 169.1 710 30.4
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 4.5e-39 167.2 214 50.5
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 5.9e-39 166.8 579 32.1
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.7e-39 166.4 681 30.8
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.7e-39 166.4 636 33.0
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 5.0e-38 163.7 645 31.0
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 8.6e-38 162.9 704 29.8
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 4.3e-37 160.6 638 31.5
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 5.6e-37 160.2 660 30.6
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.5e-34 152.1 584 31.5
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.3e-33 149.1 642 30.4
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 5.4e-32 143.7 732 27.5
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 9.2e-32 142.9 704 29.1
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 2.0e-31 141.7 494 33.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.5e-31 141.0 705 28.1
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 7.8e-31 139.8 697 30.3
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.5e-29 135.6 733 26.5
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.9e-29 135.2 706 26.9
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.3e-29 133.3 657 29.5
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 7.3e-29 133.3 666 28.4
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 9.5e-29 132.9 203 44.3
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.6e-28 132.1 679 28.3
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.0e-27 129.4 685 26.1
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.1e-27 127.9 699 28.6
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 3.1e-27 127.9 621 29.1
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 3.1e-27 127.9 688 28.2
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.9e-27 126.3 718 29.7
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.5e-26 125.6 663 28.4
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 9.8e-26 122.9 659 27.2
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.3e-25 122.5 634 28.9
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.0e-22 111.3 526 27.6
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.0e-22 111.3 280 34.3
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 7.3e-21 106.7 465 28.4
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.6e-20 105.5 502 30.7
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 2.1e-20 105.1 557 29.1
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 3.6e-20 104.4 430 28.6
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 3.6e-20 104.4 465 28.2
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 5.2e-19 100.5 211 44.1
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 1.2e-18 99.4 380 29.5
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 1.7e-17 95.5 108 56.5
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 3.7e-17 94.4 467 27.4
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 4.9e-17 94.0 108 55.6
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.9e-16 92.0 507 29.6
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 3.2e-16 91.3 262 34.7
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.0e-14 86.3 213 33.3
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.5e-13 82.4 376 27.9
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.3e-13 81.3 276 31.5
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 4.3e-13 80.9 270 31.5
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 7.3e-13 80.1 469 27.7
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 6.2e-12 77.0 414 30.4
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-11 75.9 399 27.8
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 1.4e-11 75.9 399 27.8
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 5.2e-11 73.9 112 44.6
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 8.9e-11 73.2 321 32.4
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 4.4e-10 70.9 396 28.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 5.8e-10 70.5 396 28.5
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.3e-09 69.3 495 27.7
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.2e-08 64.7 399 25.8
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 5.4e-08 63.9 492 24.0
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.2e-07 62.8 192 28.6
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.2e-07 62.8 194 29.4
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 3.5e-07 61.2 325 26.2
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 3.5e-07 61.2 419 25.5
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 6.0e-07 60.5 438 25.3
Duzib205G0479 Durio zibethinus HOM05D003765 ORTHO05D004561 1.0e-06 59.7 91 39.6
Gohir.A05G095700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 1.3e-06 59.3 166 27.1
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 3.0e-06 58.2 166 26.5
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 3.0e-06 58.2 582 24.4
Gohir.D05G096000 Gossypium hirsutum HOM05D002515 ORTHO05D002722 3.9e-06 57.8 166 26.5
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 8.6e-06 56.6 426 24.2
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 8.6e-06 56.6 426 24.2


User provided reference genes

Program Settings