Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 6.5e-14 79.3 36 100.0
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 6.5e-14 79.3 36 100.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 6.5e-14 79.3 36 100.0
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 6.5e-14 79.3 36 100.0
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 6.5e-14 79.3 36 100.0
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 3.2e-13 77.0 36 97.2
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 9.4e-13 75.5 36 94.4
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.6e-12 74.7 36 94.4
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.1e-12 74.3 36 91.7
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.1e-12 74.3 36 91.7
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 2.7e-12 73.9 36 91.7
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 2.7e-12 73.9 36 91.7
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 4.7e-12 73.2 36 91.7
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 6.1e-12 72.8 36 91.7
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.0e-11 72.0 36 88.9
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.0e-11 72.0 36 88.9
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.0e-11 72.0 36 88.9
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.0e-11 72.0 36 88.9
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 88.9
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 86.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 86.1
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 86.1
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 86.1
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.8e-11 71.2 36 86.1
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 2.3e-11 70.9 36 86.1
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.3e-11 70.9 36 86.1
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 2.3e-11 70.9 36 86.1
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 2.3e-11 70.9 36 88.9
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 2.3e-11 70.9 36 88.9
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.0e-11 70.5 36 86.1
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.0e-11 70.5 36 88.9
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 3.0e-11 70.5 36 86.1
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 5.2e-11 69.7 36 88.9
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 6.8e-11 69.3 36 83.3
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 6.8e-11 69.3 36 83.3
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 6.8e-11 69.3 36 86.1
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 8.8e-11 68.9 36 86.1
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 8.8e-11 68.9 34 88.2
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 86.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 86.1
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 86.1
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 86.1
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 80.6
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.2e-10 68.6 36 80.6
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 86.1
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 86.1
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 86.1
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 1.5e-10 68.2 36 83.3
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 2.0e-10 67.8 36 80.6
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 2.0e-10 67.8 36 86.1
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 2.0e-10 67.8 36 86.1
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.6e-10 67.4 36 83.3
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 2.6e-10 67.4 36 86.1
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 2.6e-10 67.4 36 86.1
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 4.4e-10 66.6 36 80.6
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 4.4e-10 66.6 36 80.6
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 5.7e-10 66.2 36 86.1
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 83.3
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 77.8
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 80.6
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 9.8e-10 65.5 36 77.8
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 1.3e-09 65.1 36 77.8
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 1.3e-09 65.1 36 80.6
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 1.3e-09 65.1 36 83.3
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 1.3e-09 65.1 36 83.3
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 1.3e-09 65.1 36 83.3
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.3e-09 65.1 36 80.6
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.7e-09 64.7 36 77.8
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.2e-09 64.3 36 80.6
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 2.2e-09 64.3 36 80.6
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 2.8e-09 63.9 36 83.3
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 3.7e-09 63.5 36 77.8
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.3e-09 62.8 36 77.8
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.3e-09 62.8 36 77.8
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 6.3e-09 62.8 36 80.6
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 6.3e-09 62.8 36 80.6
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 8.3e-09 62.4 36 80.6
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 8.3e-09 62.4 36 77.8
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 8.3e-09 62.4 36 80.6
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.1e-08 62.0 36 77.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.1e-08 62.0 36 77.8
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.4e-08 61.6 36 72.2
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.4e-08 61.6 36 80.6
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 2.4e-08 60.8 36 77.8
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 3.1e-08 60.5 36 77.8
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 5.4e-08 59.7 36 75.0
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 7.0e-08 59.3 36 75.0
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 9.1e-08 58.9 26 96.2
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 9.1e-08 58.9 26 96.2
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 1.2e-07 58.5 36 77.8
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 2.0e-07 57.8 31 80.6
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 2.7e-07 57.4 36 75.0
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 3.5e-07 57.0 36 72.2
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.5e-07 57.0 36 77.8
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.3e-06 55.1 36 61.1
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 5.0e-06 53.1 36 69.4
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 5.0e-06 53.1 36 69.4


User provided reference genes

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