Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.3e-290 1000.7 553 100.0
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.9e-206 722.2 633 65.6
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 8.6e-206 720.7 634 65.8
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 4.9e-201 704.9 626 64.1
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.0e-199 699.5 570 69.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 5.6e-197 691.4 627 62.7
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 4.4e-194 681.8 674 60.2
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.9e-185 652.5 625 59.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 6.4e-185 651.4 626 59.9
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.1e-184 650.6 630 58.9
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.4e-184 650.2 623 59.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.4e-184 650.2 617 60.1
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.1e-181 640.6 642 58.1
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.5e-181 640.2 617 59.5
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 8.4e-161 571.2 601 56.6
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.6e-156 557.0 628 51.9
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 3.1e-155 552.7 636 51.9
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 4.5e-154 548.9 639 51.6
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.5e-152 542.0 634 49.8
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.8e-148 529.6 628 49.5
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 2.4e-147 526.6 628 50.5
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 2.4e-147 526.6 632 48.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.0e-146 523.5 628 48.9
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 4.5e-146 522.3 628 50.5
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.0e-145 518.8 637 49.5
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.9e-144 516.9 633 48.5
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.1e-143 513.5 631 48.8
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 6.1e-143 511.9 653 48.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.1e-143 511.9 620 49.2
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.9e-141 506.9 635 46.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 5.7e-141 505.4 634 48.6
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 9.7e-141 504.6 622 49.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.2e-140 503.4 620 48.9
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.2e-140 503.4 634 48.4
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 5.3e-139 498.8 640 48.3
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 9.0e-139 498.0 638 46.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-137 494.6 378 74.9
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.0e-137 492.3 620 47.6
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 9.4e-136 488.0 623 47.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.6e-135 487.3 619 47.3
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.6e-135 486.1 638 47.2
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 3.6e-135 486.1 630 45.4
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.0e-134 483.0 631 46.8
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.9e-134 482.6 630 46.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 1.5e-133 480.7 642 45.2
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.0e-133 480.3 563 50.4
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 2.5e-133 479.9 625 46.6
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 2.5e-133 479.9 625 46.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.8e-132 476.5 631 46.1
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 4.8e-132 475.7 623 45.7
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 6.3e-132 475.3 623 45.6
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 8.2e-132 474.9 625 46.2
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.1e-131 474.6 627 45.8
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.4e-131 474.2 620 46.3
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 3.1e-131 473.0 636 47.0
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 9.1e-131 471.5 621 46.5
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.6e-130 469.9 597 48.2
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 3.4e-130 469.5 624 44.4
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 3.4e-130 469.5 633 45.8
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.0e-129 468.0 567 50.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.2e-129 466.8 629 44.7
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.8e-129 466.1 631 44.2
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 5.0e-129 465.7 633 45.2
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 5.0e-129 465.7 631 46.0
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 8.5e-129 464.9 635 45.4
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.2e-128 463.0 630 45.2
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.2e-128 462.6 613 46.2
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.0e-126 458.0 628 44.1
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.4e-123 447.6 659 42.3
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.5e-122 444.1 559 46.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 5.0e-121 439.1 627 42.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.6e-119 434.1 632 42.6
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.7e-119 433.3 635 42.4
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.0e-118 429.5 621 43.3
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 8.8e-118 428.3 634 42.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.7e-116 424.1 601 44.1
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 3.1e-115 419.9 531 49.0
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 7.0e-115 418.7 589 43.6
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 3.5e-114 416.4 531 47.1
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.5e-113 412.1 513 46.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 8.5e-113 411.8 631 42.2
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.1e-112 411.4 629 41.5
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 5.5e-112 409.1 631 41.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.2e-111 407.9 559 45.4
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.8e-110 404.1 510 47.8
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.0e-110 402.9 510 47.6
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 3.7e-108 396.4 600 44.3
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.1e-107 394.8 420 53.6
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.0e-107 392.1 382 56.0
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.5e-106 389.8 627 39.9
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.0e-105 388.3 662 38.7
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.5e-104 384.4 381 56.2
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.9e-104 384.0 631 39.3
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.5e-104 383.6 510 45.1
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 7.2e-104 382.1 620 40.8
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 9.2e-99 365.2 538 44.4
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.8e-97 359.8 452 48.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.8e-94 349.0 539 42.1
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 3.7e-92 343.2 661 36.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.9e-75 287.7 419 42.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.6e-63 248.1 371 44.2
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.8e-62 244.6 596 32.0
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.3e-56 223.4 358 41.3
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 6.2e-55 219.5 468 36.5
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 6.2e-55 219.5 468 36.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 6.2e-55 219.5 361 39.6
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 3.1e-54 217.2 648 28.7
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 4.6e-50 203.4 628 27.2
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 4.3e-48 196.8 261 43.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 3.5e-42 177.2 608 27.0
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.8e-41 174.9 249 42.2
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.8e-41 174.9 249 42.2
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 8.7e-41 172.6 458 28.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 3.0e-33 147.5 130 60.8
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.7e-33 146.0 342 36.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.3e-31 139.8 131 58.0
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.6e-29 132.9 142 49.3
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.1e-27 129.0 140 50.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.7e-26 124.4 491 28.9
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 4.6e-26 123.6 134 46.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-25 122.1 140 45.7
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 4.8e-23 113.6 144 42.4
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.3e-22 110.2 315 33.0
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 3.8e-20 104.0 327 27.2
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-18 99.0 116 44.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 6.7e-17 93.2 88 51.1
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.0e-16 91.7 80 57.5
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.3e-15 86.7 103 50.5
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.9e-14 83.2 64 64.1
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 2.6e-13 81.3 164 31.7
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.6e-13 81.3 152 32.9
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 4.5e-13 80.5 66 57.6
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 7.9e-10 69.7 82 45.1
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 5.2e-09 67.0 86 50.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 8.8e-09 66.2 88 44.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 1.5e-08 65.5 112 33.0
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 4.4e-08 63.9 40 72.5
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.1e-06 59.3 88 40.9
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.4e-06 58.9 91 36.3


User provided reference genes

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