Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 8.0e-263 909.8 442 100.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.6e-221 771.9 420 88.6
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.4e-214 749.6 421 85.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 9.0e-206 720.3 419 83.1
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.4e-197 691.8 417 80.3
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.6e-194 682.9 420 79.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-192 674.9 421 77.0
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 4.3e-192 674.9 420 78.1
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.8e-191 672.2 421 76.7
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 5.5e-187 657.9 420 75.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.6e-186 656.4 427 76.3
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.5e-186 655.2 420 75.5
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.5e-184 649.8 420 74.5
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.4e-184 647.5 420 73.1
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.8e-183 645.6 421 74.8
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.8e-182 642.9 421 74.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.1e-182 642.1 421 73.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 4.0e-182 641.7 420 71.9
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 8.4e-180 634.0 420 71.7
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 5.5e-179 631.3 420 72.6
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.6e-178 629.8 420 72.1
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 3.5e-178 628.6 420 71.2
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 4.6e-178 628.2 420 70.5
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.3e-177 626.7 419 72.1
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.7e-177 624.0 420 69.8
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.1e-176 623.6 420 70.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 3.3e-176 622.1 420 69.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.3e-176 622.1 420 69.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 9.7e-176 620.5 420 69.5
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.6e-175 619.8 423 70.7
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.8e-175 619.0 420 68.8
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.7e-175 618.6 420 69.3
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.3e-175 617.8 420 69.3
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 6.3e-175 617.8 420 69.3
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 8.2e-175 617.5 420 70.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 8.2e-175 617.5 420 70.0
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 4.1e-174 615.1 420 69.5
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 4.1e-174 615.1 420 69.8
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 9.0e-174 614.0 420 69.5
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-173 613.2 420 68.6
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.4e-173 612.1 420 69.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.4e-173 612.1 420 68.6
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.3e-172 610.1 420 68.1
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.7e-172 609.8 420 68.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.7e-172 609.8 420 69.8
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.2e-172 609.4 420 68.8
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.9e-172 609.0 420 70.7
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.5e-171 605.9 431 68.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.2e-171 605.5 420 68.6
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 4.2e-171 605.1 420 70.0
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 7.2e-171 604.4 420 68.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 7.2e-171 604.4 405 71.4
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.7e-170 602.4 420 67.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.6e-170 602.1 420 69.5
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 6.1e-170 601.3 420 68.1
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 7.9e-170 600.9 420 68.1
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 2.3e-169 599.4 420 68.1
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 3.9e-169 598.6 420 67.1
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.9e-169 598.6 420 67.9
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 6.7e-169 597.8 420 68.1
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.8e-169 597.4 420 67.9
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.1e-168 597.0 421 68.4
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.3e-168 595.5 417 68.1
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.3e-168 595.5 417 67.9
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 5.7e-168 594.7 420 67.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.4e-166 590.1 417 67.1
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 9.1e-166 587.4 421 67.7
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.4e-165 585.5 420 65.5
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-164 583.6 417 65.9
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.7e-164 583.2 420 65.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.5e-163 578.2 408 66.7
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.2e-162 577.0 415 65.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.6e-162 576.6 425 64.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 4.7e-162 575.1 425 64.7
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 7.9e-162 574.3 425 65.2
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.9e-162 574.3 420 67.4
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.8e-161 573.2 420 65.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.8e-161 573.2 421 66.0
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.0e-160 569.7 420 65.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.3e-160 568.9 440 63.0
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.3e-160 568.9 421 65.3
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.4e-160 567.8 420 63.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 7.4e-160 567.8 427 65.1
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 9.7e-160 567.4 417 66.4
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 3.7e-159 565.5 420 64.5
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 3.7e-159 565.5 423 65.7
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.1e-158 563.9 404 65.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.8e-158 563.1 420 63.8
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.4e-158 562.8 423 63.4
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 7.0e-158 561.2 420 64.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 9.1e-158 560.8 429 62.0
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 4.5e-157 558.5 420 62.4
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 4.5e-157 558.5 421 65.1
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 2.9e-156 555.8 427 62.3
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 5.0e-156 555.1 424 63.4
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 3.2e-155 552.4 420 63.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 5.5e-155 551.6 427 62.5
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 9.4e-155 550.8 421 65.1
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.2e-154 550.4 427 62.1
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.6e-154 550.1 427 62.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 3.6e-154 548.9 427 61.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.1e-152 543.9 422 61.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 62.4
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.4e-150 536.2 421 62.7
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 5.3e-150 535.0 422 62.8
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.2e-148 529.6 421 62.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.4e-145 520.4 421 62.7
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.5e-144 516.9 420 58.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 4.1e-142 508.8 420 56.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 5.3e-142 508.4 377 64.2
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.3e-140 503.8 425 58.1
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 5.5e-139 498.4 417 57.3
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.0e-137 494.2 418 57.9
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 9.1e-134 481.1 357 66.4
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 3.7e-127 459.1 425 54.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.1e-126 455.7 402 55.5
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 4.0e-121 439.1 425 52.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.4e-112 409.5 259 75.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.1e-110 402.5 411 46.5
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.5e-107 394.0 278 67.3
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.5e-107 393.3 422 49.1
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 9.9e-104 381.3 329 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.4e-89 334.3 374 45.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.9e-89 332.0 302 57.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.9e-87 326.6 415 41.7
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 9.9e-80 301.6 298 50.7
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.7e-79 300.8 248 55.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.3e-70 268.5 266 55.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 5.7e-67 259.2 317 42.0
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.9e-54 217.6 134 75.4
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.5e-43 181.4 174 54.0
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.8e-41 174.5 131 62.6
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-41 174.1 99 80.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-39 167.5 91 83.5
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.9e-30 137.9 74 81.1
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-30 136.7 71 83.1
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-28 131.7 71 81.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.0e-27 127.9 71 80.3
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.0e-27 127.9 71 80.3
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 7.2e-22 109.4 80 63.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.3e-20 104.4 101 51.5
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.4e-09 67.8 281 23.8
Hund23611 Selenicereus undatus HOM05D001396 ORTHO05D000493 7.0e-09 66.2 249 24.9
MD17G1089600 Malus domestica HOM05D008065 ORTHO05D010197 9.2e-09 65.9 320 24.7
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 9.2e-09 65.9 410 22.7
Migut.E00919 Erythranthe guttata HOM05D005930 ORTHO05D003423 3.5e-08 63.9 291 24.4
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 7.8e-08 62.8 265 23.8
FvH4_3g17130 Fragaria vesca HOM05D000051 ORTHO05D000015 3.3e-06 57.4 236 26.7
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-06 57.4 237 24.1
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-06 57.4 237 24.1
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-06 57.4 237 24.5


User provided reference genes

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