Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21206 Trifolium pratense HOM05D000860 ORTHO05D005731 3.0e-246 854.7 432 100.0
TPR.G21211 Trifolium pratense HOM05D000860 ORTHO05D005731 5.0e-169 598.2 431 75.2
Medtr1g064690 Medicago truncatula HOM05D000860 ORTHO05D005731 4.4e-133 478.8 458 60.9
Psat6g067960 Pisum sativum HOM05D000860 ORTHO05D005731 2.7e-122 443.0 430 59.8
Ca_11464_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 1.0e-105 387.9 419 55.1
Lalb_Chr01g0018861 Lupinus albus HOM05D000860 ORTHO05D005731 3.0e-89 333.2 470 45.7
Phvul.007G221200 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 3.9e-89 332.8 436 47.7
Glyma.10G051900 Glycine max HOM05D000860 ORTHO05D005731 1.7e-87 327.4 470 45.7
Lj5g0023643 Lotus japonicus HOM05D000860 ORTHO05D005731 8.2e-87 325.1 468 47.2
VMungo0720G0157 Vigna mungo HOM05D000860 ORTHO05D005731 6.9e-86 322.0 461 45.3
Glyma.13G139300 Glycine max HOM05D000860 ORTHO05D005731 2.9e-84 316.6 459 46.8
Lalb_Chr06g0171491 Lupinus albus HOM05D000860 ORTHO05D005731 3.3e-80 303.1 438 45.7
arahy.Tifrunner.gnm1.ann1.7R2GAN Arachis hypogaea HOM05D000860 ORTHO05D005731 9.1e-78 295.0 447 43.8
TPR.G18266 Trifolium pratense HOM05D000860 ORTHO05D005731 1.7e-76 290.8 443 44.0
arahy.Tifrunner.gnm1.ann1.AHVV25 Arachis hypogaea HOM05D000860 ORTHO05D005731 8.5e-76 288.5 447 43.2
Ca_08841_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 4.7e-74 282.7 435 42.5
Medtr7g101130 Medicago truncatula HOM05D000860 ORTHO05D005731 1.0e-73 281.6 443 44.2
Lj1g0015108 Lotus japonicus HOM05D000860 ORTHO05D005731 8.8e-73 278.5 460 40.9
Glyma.03G180300 Glycine max HOM05D000860 ORTHO05D005731 4.8e-71 272.7 466 40.8
Psat3g043560 Pisum sativum HOM05D000860 ORTHO05D005731 1.8e-70 270.8 465 41.1
Glyma.19G181000 Glycine max HOM05D000860 ORTHO05D005731 2.6e-69 266.9 441 42.0
Sed0021746 Sechium edule HOM05D000860 ORTHO05D005731 5.9e-69 265.8 463 37.4
Prupe.6G237600 Prunus persica HOM05D000860 ORTHO05D005731 2.9e-68 263.5 437 40.3
MD04G1099200 Malus domestica HOM05D000860 ORTHO05D005731 8.5e-68 261.9 422 41.7
CsaV3_3G035740 Cucumis sativus L. HOM05D000860 ORTHO05D005731 1.5e-67 261.2 468 36.5
QL07p044635 Quercus lobata HOM05D000860 ORTHO05D005731 3.6e-66 256.5 431 39.4
Haze_20609 Corylus avellana HOM05D000860 ORTHO05D005731 4.7e-66 256.1 449 38.3
Cfa017540 Carpinus fangiana HOM05D000860 ORTHO05D005731 6.1e-66 255.8 422 39.6
FAN02G4050 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.8e-65 254.2 435 38.9
RcHm_v2.0_Chr3g0469451 Rosa chinensis HOM05D000860 ORTHO05D005731 1.8e-65 254.2 435 37.9
MELO3C009334.2 Cucumis melo HOM05D000860 ORTHO05D005731 2.3e-65 253.8 470 36.6
FvH4_6g15740 Fragaria vesca HOM05D000860 ORTHO05D005731 4.0e-65 253.1 435 38.9
FAN05G3398 Fragaria x ananassa HOM05D000860 ORTHO05D005731 5.2e-65 252.7 435 38.6
FAN09G1893 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.2e-64 251.5 435 38.4
FAN14G4874 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.2e-64 251.5 435 38.4
FAN14G5122 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.5e-64 251.1 435 38.6
ClCG10G020360 Citrullus lanatus HOM05D000860 ORTHO05D005731 5.7e-64 249.2 457 36.3
MD12G1119800 Malus domestica HOM05D000860 ORTHO05D005731 1.3e-63 248.1 423 40.4
Phvul.001G176600 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 1.3e-63 248.1 453 40.0
Ciclev10011672m.g Citrus clementina HOM05D000860 ORTHO05D005731 7.0e-62 242.3 452 37.2
VMungo1383G0750 Vigna mungo HOM05D000860 ORTHO05D005731 9.1e-62 241.9 459 39.4
CiPaw.10G134300 Carya illinoinensis HOM05D000860 ORTHO05D005731 2.7e-61 240.4 422 37.0
COL.COLO4_27038 Corchorus olitorius HOM05D000860 ORTHO05D005731 8.5e-60 235.3 449 36.7
Thecc.05G057900 Theobroma cacao HOM05D000860 ORTHO05D005731 4.2e-59 233.0 452 36.3
CiPaw.09G177100 Carya illinoinensis HOM05D000860 ORTHO05D005731 2.1e-58 230.7 385 39.2
Potri.006G128800 Populus trichocarpa HOM05D000860 ORTHO05D005731 1.5e-56 224.6 444 36.9
Duzib128G0216 Durio zibethinus HOM05D000860 ORTHO05D005731 4.9e-55 219.5 447 35.8
Atru.chr8.1875 Acer truncatum HOM05D000860 ORTHO05D005731 1.1e-54 218.4 440 35.5
CANSAT80G1090 Cannabis sativa HOM05D000860 ORTHO05D005731 1.4e-54 218.0 423 36.2
Manes.08G006300 Manihot esculenta HOM05D000860 ORTHO05D005731 2.4e-54 217.2 449 35.4
TWI74G0048 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 2.4e-54 217.2 436 37.4
RcHm_v2.0_Chr7g0226531 Rosa chinensis HOM05D000860 ORTHO05D005731 5.4e-54 216.1 354 39.8
Manes.09G068966 Manihot esculenta HOM05D000860 ORTHO05D005731 3.5e-53 213.4 379 36.4
Eucgr.A01156 Eucalyptus grandis HOM05D000860 ORTHO05D005731 5.9e-53 212.6 430 36.0
Aa31LG1G21890 Aethionema arabicum HOM05D000860 ORTHO05D005731 2.9e-52 210.3 456 34.2
Potri.016G088900 Populus trichocarpa HOM05D000860 ORTHO05D005731 2.9e-52 210.3 454 33.7
Sabra06G0101400 Salix brachista HOM05D000860 ORTHO05D005731 5.0e-52 209.5 443 35.0
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 4.2e-51 206.5 279 47.3
Gohir.D13G024000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 7.2e-51 205.7 398 35.4
TWI53G0334 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 1.2e-50 204.9 437 35.2
Gorai.013G027100 Gossypium raimondii HOM05D000860 ORTHO05D005731 1.6e-50 204.5 374 36.4
Gohir.A13G025400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 2.1e-50 204.1 432 33.8
THA.LOC104806503 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 8.0e-50 202.2 412 35.9
TAR623G0466 Trochodendron aralioides HOM05D000860 ORTHO05D005731 8.0e-50 202.2 451 33.7
AT3G53400 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 1.4e-49 201.4 438 34.7
THA.LOC104816335 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 1.8e-49 201.1 437 35.0
vmacro14442 Vaccinium macrocarpon HOM05D000860 ORTHO05D005731 2.3e-49 200.7 426 35.9
CSS0027524 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 3.0e-49 200.3 419 36.5
CSS0043489 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 3.0e-49 200.3 419 36.5
Aa31LG10G8580 Aethionema arabicum HOM05D000860 ORTHO05D005731 1.2e-48 198.4 420 35.5
Carub.0005s1996 Capsella rubella HOM05D000860 ORTHO05D005731 4.4e-48 196.4 422 34.8
Thhalv10011158m.g Eutrema salsugineum HOM05D000860 ORTHO05D005731 4.4e-48 196.4 440 34.5
RcHm_v2.0_Chr1g0337551 Rosa chinensis HOM05D000860 ORTHO05D005731 4.4e-48 196.4 327 40.4
Sabra16G0094600 Salix brachista HOM05D000860 ORTHO05D005731 4.4e-48 196.4 453 33.1
Gohir.A01G215400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 1.3e-47 194.9 391 34.3
CARHR210160 Cardamine hirsuta HOM05D000860 ORTHO05D005731 1.7e-47 194.5 445 33.3
Gorai.002G248500 Gossypium raimondii HOM05D000860 ORTHO05D005731 2.2e-47 194.1 391 34.0
AT5G03190 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 2.9e-47 193.7 444 34.0
C04p39180 Brassica napus HOM05D000860 ORTHO05D005731 2.9e-47 193.7 439 32.8
AL5G34320 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 4.9e-47 193.0 440 33.9
Lalb_Chr25g0289151 Lupinus albus HOM05D000860 ORTHO05D005731 1.4e-46 191.4 265 46.8
A04p06160 Brassica napus HOM05D000860 ORTHO05D005731 1.8e-46 191.0 436 33.5
CARHR163310 Cardamine hirsuta HOM05D000860 ORTHO05D005731 1.8e-46 191.0 442 33.9
Sc20g0005200 Simmondsia chinensis HOM05D000860 ORTHO05D005731 3.2e-46 190.3 416 36.1
BraA04t16319Z Brassica rapa HOM05D000860 ORTHO05D005731 9.2e-46 188.7 436 33.3
BcaB02g08527 Brassica carinata HOM05D000860 ORTHO05D005731 1.2e-45 188.3 434 33.9
Sp5g08940 Schrenkiella parvula HOM05D000860 ORTHO05D005731 3.5e-45 186.8 440 32.7
BolC4t25490H Brassica oleracea HOM05D000860 ORTHO05D005731 4.6e-45 186.4 379 34.6
Sp6g39530 Schrenkiella parvula HOM05D000860 ORTHO05D005731 1.3e-44 184.9 440 33.6
AL6G12470 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 1.7e-44 184.5 440 33.0
Ah.15g092300 Amaranthus hybridus HOM05D000860 ORTHO05D005731 8.6e-44 182.2 436 33.0
Rhsim01G0217500 Rhododendron simsii HOM05D000860 ORTHO05D005731 1.9e-43 181.0 427 33.5
Lsat_1_v5_gn_6_46140 Lactuca sativa HOM05D000860 ORTHO05D005731 7.3e-43 179.1 343 36.4
Gohir.D01G204000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 2.8e-42 177.2 341 35.8
Aqoxy1G01248 Aquilegia oxysepala HOM05D000860 ORTHO05D005731 6.2e-42 176.0 436 33.3
AUR62040362 Chenopodium quinoa HOM05D000860 ORTHO05D005731 8.0e-42 175.6 445 33.9
Duzib093G2042 Durio zibethinus HOM05D000860 ORTHO05D005731 8.0e-42 175.6 389 33.4
Hma1.2p1_1031F.1_g249970 Hydrangea macrophylla HOM05D000860 ORTHO05D005731 8.0e-42 175.6 421 33.0
EL10Ac7g16545 Beta vulgaris HOM05D000860 ORTHO05D005731 1.8e-41 174.5 443 33.6
AUR62042284 Chenopodium quinoa HOM05D000860 ORTHO05D005731 1.8e-41 174.5 441 33.3
HanXRQChr13g0403481 Helianthus annuus HOM05D000860 ORTHO05D005731 1.8e-41 174.5 337 34.7
PSO339G5579 Papaver somniferum HOM05D000860 ORTHO05D005731 3.1e-41 173.7 466 30.7
Nn2g10774 Nelumbo nucifera HOM05D000860 ORTHO05D005731 5.2e-41 172.9 441 30.6
ECA233G3204 Erigeron canadensis HOM05D000860 ORTHO05D005731 3.4e-40 170.2 331 35.3
PSO063G2151 Papaver somniferum HOM05D000860 ORTHO05D005731 1.3e-39 168.3 468 30.6
Oeu001264.1 Olea europaea HOM05D000860 ORTHO05D005731 1.2e-37 161.8 455 32.5
DCAR_018816 Daucus carota HOM05D000860 ORTHO05D005731 3.5e-37 160.2 427 30.4
SGA_v2.0_scaffold97G29220 Striga asiatica HOM05D000860 ORTHO05D005731 3.5e-37 160.2 444 31.1
Peaxi162Scf00270g00092 Petunia axillaris HOM05D000860 ORTHO05D005731 6.0e-37 159.5 427 29.7
Cc01_g11220 Coffea canephora HOM05D000860 ORTHO05D005731 7.8e-37 159.1 438 29.9
Cpa.g.c33722 Carica papaya HOM05D000860 ORTHO05D005731 1.7e-36 157.9 276 39.1
Psat3g054960 Pisum sativum HOM05D000860 ORTHO05D005731 1.7e-36 157.9 355 36.3
DCAR_022736 Daucus carota HOM05D000860 ORTHO05D005731 3.0e-36 157.1 381 31.8
MBI10_g20798_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D005731 1.9e-35 154.5 461 30.6
Nitab4.5_0003701g0030 Nicotiana tabacum HOM05D000860 ORTHO05D005731 5.6e-35 152.9 448 29.7
Nitab4.5_0000650g0160 Nicotiana tabacum HOM05D000860 ORTHO05D005731 9.5e-35 152.1 432 29.4
CAN.G631.19 Capsicum annuum HOM05D000860 ORTHO05D005731 1.6e-34 151.4 428 30.8
ECA248G3821 Erigeron canadensis HOM05D000860 ORTHO05D005731 8.1e-34 149.1 311 33.1
Migut.D02216 Erythranthe guttata HOM05D000860 ORTHO05D005731 2.3e-33 147.5 421 30.4
Psat3g054920 Pisum sativum HOM05D000860 ORTHO05D005731 5.2e-33 146.4 312 35.3
SalBow3G0016 Salvia bowleyana HOM05D000860 ORTHO05D005731 2.0e-32 144.4 440 29.5
Lsat_1_v5_gn_1_65400 Lactuca sativa HOM05D000860 ORTHO05D005731 4.4e-32 143.3 335 31.6
PGSC0003DMG400008059 Solanum tuberosum HOM05D000860 ORTHO05D005731 9.8e-32 142.1 338 31.7
Solyc11g069330.1 Solanum lycopersicum HOM05D000860 ORTHO05D005731 2.2e-31 141.0 336 30.4
Sopen11g028050 Solanum pennellii HOM05D000860 ORTHO05D005731 3.7e-31 140.2 433 27.7
Migut.O00631 Erythranthe guttata HOM05D000860 ORTHO05D005731 4.9e-31 139.8 420 31.2
Psat6g084760 Pisum sativum HOM05D000860 ORTHO05D005731 1.2e-29 135.2 262 39.7
BcaC02g09168 Brassica carinata HOM05D000860 ORTHO05D005731 1.1e-27 128.6 285 33.0
ClCG04G008950 Citrullus lanatus HOM05D000860 ORTHO05D005731 2.5e-27 127.5 254 36.6
BcaC02g09167 Brassica carinata HOM05D000860 ORTHO05D005731 1.2e-26 125.2 364 28.8
Sed0008091 Sechium edule HOM05D000860 ORTHO05D005731 2.1e-26 124.4 244 35.2
unitig_22.g6662 Utricularia gibba HOM05D000860 ORTHO05D005731 2.1e-26 124.4 447 26.8
Actinidia20451 Actinidia chinensis HOM05D000860 ORTHO05D005731 4.7e-26 123.2 315 31.7
MELO3C014247.2 Cucumis melo HOM05D000860 ORTHO05D005731 1.8e-25 121.3 244 37.7
CsaV3_6G039460 Cucumis sativus L. HOM05D000860 ORTHO05D005731 3.1e-25 120.6 252 36.5
SalBow3G3227 Salvia bowleyana HOM05D000860 ORTHO05D005731 1.3e-23 115.2 341 29.0
ATR0115G014 Amborella trichopoda HOM05D000860 ORTHO05D005731 4.9e-23 113.2 354 28.0
QL09p001288 Quercus lobata HOM05D000860 ORTHO05D005731 6.4e-23 112.8 137 48.2
A09p46410 Brassica napus HOM05D000860 ORTHO05D005731 7.1e-22 109.4 255 32.5
BraA09t40106Z Brassica rapa HOM05D000860 ORTHO05D005731 7.1e-22 109.4 255 32.5
Nn1g03114 Nelumbo nucifera HOM05D000860 ORTHO05D005731 8.6e-20 102.4 254 32.3
Lj1P190T80 Lonicera japonica HOM05D000860 ORTHO05D005731 3.6e-18 97.1 240 31.7
Nn1g03119 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.2e-16 92.0 90 45.6
C08p28750 Brassica napus HOM05D000860 ORTHO05D005731 6.4e-15 86.3 96 45.8
BolC8t50478H Brassica oleracea HOM05D000860 ORTHO05D005731 1.6e-13 81.6 207 33.3
Dinv32756 Davidia involucrata HOM05D000860 ORTHO05D005731 4.6e-13 80.1 123 39.8
Aqoxy6G01123 Aquilegia oxysepala HOM05D000860 ORTHO05D026722 1.7e-12 78.2 133 40.6
Nn7g37700 Nelumbo nucifera HOM05D000860 ORTHO05D026722 1.4e-09 68.6 172 30.8
PSO675G9271 Papaver somniferum HOM05D000860 ORTHO05D026722 1.8e-09 68.2 152 32.9
PSO541G0433 Papaver somniferum HOM05D000860 ORTHO05D026722 2.6e-08 64.3 168 32.1
Nn2g14109 Nelumbo nucifera HOM05D000860 ORTHO05D005731 4.4e-08 63.5 90 41.1
HPP92_000957 Vanilla planifolia HOM05D000860 ORTHO05D005731 1.3e-07 62.0 143 30.1
VMungo0251G2052 Vigna mungo HOM05D000860 ORTHO05D005354 4.9e-07 60.1 238 26.9
A07p12170 Brassica napus HOM05D000860 ORTHO05D005354 1.9e-06 58.2 209 26.3
BraA07t29001Z Brassica rapa HOM05D000860 ORTHO05D005354 1.9e-06 58.2 209 26.3
CARHR026650 Cardamine hirsuta HOM05D000860 ORTHO05D005354 3.2e-06 57.4 243 25.9
Thhalv10009505m.g Eutrema salsugineum HOM05D000860 ORTHO05D005354 3.2e-06 57.4 179 26.3
SEGI_25633 Sequoiadendron giganteum HOM05D000860 ORTHO05D005354 3.2e-06 57.4 149 28.9
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 5.4e-06 56.6 145 29.7
PSO455G0053 Papaver somniferum HOM05D000860 ORTHO05D005354 5.4e-06 56.6 164 29.9
SEGI_31539 Sequoiadendron giganteum HOM05D000860 ORTHO05D003230 5.4e-06 56.6 287 23.7
C07p18130 Brassica napus HOM05D000860 ORTHO05D005354 7.1e-06 56.2 209 25.8
BolC7t42323H Brassica oleracea HOM05D000860 ORTHO05D005354 7.1e-06 56.2 209 25.8
PSO170G2988 Papaver somniferum HOM05D000860 ORTHO05D005354 7.1e-06 56.2 164 29.9
Dinv14762 Davidia involucrata HOM05D000860 ORTHO05D005354 9.3e-06 55.8 147 27.9
Lj1g0021314 Lotus japonicus HOM05D000860 ORTHO05D005354 9.3e-06 55.8 232 25.9


User provided reference genes

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