Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 4.2e-66 254.6 133 100.0
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 2.8e-54 215.3 133 82.7
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 6.3e-54 214.2 129 85.3
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 1.8e-53 212.6 133 81.2
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 5.7e-47 191.0 128 75.0
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 7.4e-47 190.7 129 72.9
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 1.7e-46 189.5 133 70.7
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 1.4e-45 186.4 133 69.9
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 2.7e-41 172.2 129 68.2
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 2.0e-39 166.0 129 62.8
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-36 156.8 129 63.6
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-36 156.8 129 63.6
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 1.2e-36 156.8 129 63.6
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 4.5e-36 154.8 128 61.7
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.0e-35 153.7 126 62.7
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 1.3e-35 153.3 128 61.7
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 1.7e-35 152.9 129 59.7
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 2.9e-35 152.1 129 60.5
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 2.5e-34 149.1 128 60.2
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 5.5e-34 147.9 124 61.3
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 7.2e-34 147.5 133 60.2
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 1.6e-33 146.4 140 56.4
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.7e-33 145.6 127 59.1
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 3.6e-33 145.2 127 59.8
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 4.7e-33 144.8 128 58.6
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 6.1e-33 144.4 127 58.3
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 6.1e-33 144.4 114 63.2
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 1.0e-32 143.7 141 56.0
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 1.4e-32 143.3 129 57.4
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 1.4e-32 143.3 125 60.0
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 1.8e-32 142.9 122 61.5
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 2.3e-32 142.5 149 53.0
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 3.0e-32 142.1 128 57.8
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 5.2e-32 141.4 128 57.0
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 6.8e-32 141.0 127 56.7
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 6.8e-32 141.0 125 56.8
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 8.8e-32 140.6 128 59.4
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 1.2e-31 140.2 125 56.0
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 2.0e-31 139.4 127 56.7
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 5.7e-31 137.9 129 55.8
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 9.7e-31 137.1 128 57.0
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 1.7e-30 136.3 127 55.1
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.7e-30 136.3 129 53.5
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 2.2e-30 136.0 124 57.3
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 2.2e-30 136.0 127 56.7
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 2.8e-30 135.6 126 57.1
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 2.8e-30 135.6 80 82.5
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 3.7e-30 135.2 123 56.1
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 4.8e-30 134.8 127 55.9
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 4.8e-30 134.8 126 54.8
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 6.3e-30 134.4 127 55.9
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 6.3e-30 134.4 127 55.9
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 6.3e-30 134.4 134 53.7
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 8.3e-30 134.0 124 55.6
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 1.1e-29 133.7 125 56.0
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 1.4e-29 133.3 127 55.1
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 1.8e-29 132.9 128 51.6
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 2.4e-29 132.5 127 54.3
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 2.4e-29 132.5 137 51.1
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 3.1e-29 132.1 130 55.4
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 3.1e-29 132.1 128 51.6
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 4.1e-29 131.7 127 53.5
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 4.1e-29 131.7 129 54.3
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 4.1e-29 131.7 133 53.4
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 4.1e-29 131.7 128 53.1
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 7.0e-29 131.0 127 53.5
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 7.0e-29 131.0 145 52.4
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 9.1e-29 130.6 127 51.2
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 1.2e-28 130.2 127 52.8
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 1.2e-28 130.2 128 53.1
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 2.0e-28 129.4 124 54.8
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 4.5e-28 128.3 128 53.1
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 5.9e-28 127.9 162 48.1
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 7.7e-28 127.5 129 52.7
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 7.7e-28 127.5 127 52.8
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 1.0e-27 127.1 123 52.8
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 1.0e-27 127.1 123 52.8
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 1.3e-27 126.7 118 55.1
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.7e-27 126.3 103 61.2
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 1.7e-27 126.3 133 47.4
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 1.7e-27 126.3 127 51.2
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 3.8e-27 125.2 126 51.6
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 5.0e-27 124.8 132 52.3
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 5.0e-27 124.8 128 52.3
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 6.5e-27 124.4 123 52.8
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 6.5e-27 124.4 131 51.1
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 6.5e-27 124.4 124 52.4
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 1.9e-26 122.9 129 50.4
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.9e-26 122.9 130 51.5
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 5.5e-26 121.3 131 51.9
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 7.2e-26 120.9 130 50.8
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 9.4e-26 120.6 130 50.0
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 1.6e-25 119.8 128 46.1
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 2.7e-25 119.0 115 53.0
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 2.7e-25 119.0 127 51.2
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 3.6e-25 118.6 122 50.8
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 2.3e-24 115.9 127 47.2
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 3.4e-23 112.1 73 71.2
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 7.5e-23 110.9 79 65.8
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.8e-22 109.0 162 44.4
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 6.3e-22 107.8 99 53.5
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 2.4e-21 105.9 81 59.3
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 2.0e-20 102.8 77 61.0
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 4.5e-20 101.7 128 44.5
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 5.9e-20 101.3 127 44.1
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 3.0e-16 89.0 126 42.1
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 1.5e-15 86.7 126 42.9
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 3.4e-15 85.5 101 39.6
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 3.4e-15 85.5 126 42.1
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 1.1e-13 80.5 88 51.1
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 1.7e-11 73.2 75 45.3
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 5.0e-11 71.6 64 56.2
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 6.6e-11 71.2 98 42.9
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 6.6e-11 71.2 98 42.9
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 2.5e-10 69.3 94 43.6
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 4.3e-10 68.6 94 43.6
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 2.8e-09 65.9 89 43.8
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 2.8e-09 65.9 94 42.6
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 2.0e-07 59.7 47 59.6
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 2.0e-07 59.7 40 67.5
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 4.4e-07 58.5 38 68.4


User provided reference genes

Program Settings