Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.3e-38 162.5 81 100.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 3.5e-31 137.9 82 87.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 5.2e-19 97.4 71 69.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.1e-16 87.8 67 64.2
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.0e-16 87.0 67 65.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.2e-15 86.3 67 65.7
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.6e-15 84.3 67 64.2
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.3e-14 82.8 67 62.7
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.7e-14 82.4 67 61.2
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 5.0e-14 80.9 67 61.2
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.9e-13 79.0 67 59.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-12 75.9 66 56.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.6e-12 75.9 64 56.2
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.1e-12 75.5 67 56.7
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.1e-12 75.5 67 62.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.1e-12 75.5 66 56.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.8e-12 75.1 66 57.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 4.7e-12 74.3 70 57.1
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 4.7e-12 74.3 66 54.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.1e-12 73.6 66 53.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.1e-12 73.6 66 53.0
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.1e-12 73.6 64 56.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.1e-12 73.6 64 56.2
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 8.1e-12 73.6 69 56.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.1e-11 73.2 66 54.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-11 73.2 67 49.3
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-11 73.2 66 53.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.4e-11 72.8 66 56.1
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.4e-11 72.8 66 54.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.8e-11 72.4 69 50.7
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.1e-11 71.6 67 55.2
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.1e-11 71.6 67 53.7
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 4.0e-11 71.2 68 52.9
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.2e-11 70.9 75 50.7
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.2e-11 70.9 67 47.8
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 6.8e-11 70.5 70 52.9
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.8e-11 70.5 64 53.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.8e-11 70.5 66 51.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.9e-11 70.1 66 51.5
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.9e-11 70.1 66 51.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 8.9e-11 70.1 66 48.5
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.9e-11 70.1 67 55.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.2e-10 69.7 66 54.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.2e-10 69.7 66 50.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.5e-10 69.3 67 53.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.6e-10 68.6 66 47.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.6e-10 68.6 69 50.7
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.6e-10 68.6 64 50.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.6e-10 68.6 67 47.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.4e-10 68.2 66 48.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.4e-10 68.2 66 51.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 3.4e-10 68.2 63 55.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 4.4e-10 67.8 61 59.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.4e-10 67.8 57 54.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.8e-10 67.4 66 51.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 5.8e-10 67.4 65 50.8
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 5.8e-10 67.4 65 50.8
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 7.5e-10 67.0 70 51.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 7.5e-10 67.0 58 55.2
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 7.5e-10 67.0 58 55.2
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 7.5e-10 67.0 63 55.6
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 7.5e-10 67.0 51 60.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 9.9e-10 66.6 66 51.5
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.9e-10 66.6 66 47.0
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 9.9e-10 66.6 57 54.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 9.9e-10 66.6 66 51.5
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 9.9e-10 66.6 66 48.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.3e-09 66.2 66 50.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-09 66.2 62 56.5
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-09 66.2 64 50.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.3e-09 66.2 70 50.0
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-09 66.2 66 48.5
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.3e-09 66.2 65 47.7
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 2.2e-09 65.5 62 51.6
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.9e-09 65.1 64 50.0
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.7e-09 64.7 68 51.5
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.7e-09 64.7 79 45.6
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.9e-09 64.3 64 48.4
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.9e-09 64.3 54 55.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 8.3e-09 63.5 61 54.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 8.3e-09 63.5 62 53.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-08 63.2 66 47.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-08 63.2 67 50.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.1e-08 63.2 58 51.7
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.1e-08 63.2 58 51.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.4e-08 62.8 68 50.0
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.9e-08 62.4 68 42.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.4e-08 62.0 64 50.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.4e-08 62.0 62 51.6
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 3.2e-08 61.6 67 46.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.1e-08 61.2 72 43.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 5.4e-08 60.8 68 45.6
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 7.1e-08 60.5 70 45.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.1e-08 60.5 69 46.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.2e-08 60.1 67 49.3
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.2e-08 60.1 69 46.4
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 9.2e-08 60.1 77 44.2
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.7e-07 58.5 63 47.6
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.5e-07 58.2 67 47.8
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.5e-07 58.2 72 43.1
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.6e-07 57.8 94 38.3
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 6.0e-07 57.4 71 49.3
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 7.8e-07 57.0 70 45.7
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 7.8e-07 57.0 68 42.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.8e-07 57.0 66 45.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.8e-07 57.0 66 43.9
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.7e-06 55.8 63 47.6
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.3e-06 55.5 65 50.8
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.3e-06 55.5 54 48.1
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.0e-06 55.1 71 46.5
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 3.9e-06 54.7 70 45.7
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 3.9e-06 54.7 57 50.9
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 5.1e-06 54.3 70 45.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 5.1e-06 54.3 58 46.6
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.6e-06 53.9 73 42.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 8.6e-06 53.5 62 48.4
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 8.6e-06 53.5 62 48.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 8.6e-06 53.5 62 48.4


User provided reference genes

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