Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 4.7e-38 161.0 99 100.0
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 1.7e-24 115.9 99 82.8
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 8.3e-19 97.1 100 73.0
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 8.3e-19 97.1 99 73.7
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 9.2e-18 93.6 99 75.8
Glyma.10G256400 Glycine max HOM05D006534 ORTHO05D006434 8.6e-16 87.0 99 73.7
Glyma.20G135200 Glycine max HOM05D006534 ORTHO05D006434 8.6e-16 87.0 99 73.7
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 2.5e-15 85.5 105 66.7
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 3.3e-15 85.1 99 67.7
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 3.3e-15 85.1 99 73.7
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 4.3e-15 84.7 99 70.7
Lalb_Chr06g0165061 Lupinus albus HOM05D006534 ORTHO05D006434 4.3e-15 84.7 99 58.6
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 4.7e-14 81.3 99 70.7
Ah.01g007070 Amaranthus hybridus HOM05D006534 ORTHO05D006434 2.3e-13 79.0 105 60.0
Atru.chr5.2330 Acer truncatum HOM05D006534 ORTHO05D006434 3.1e-13 78.6 99 72.7
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 4.0e-13 78.2 100 61.0
Lalb_Chr02g0144951 Lupinus albus HOM05D006534 ORTHO05D006434 8.9e-13 77.0 109 49.5
ClCG10G010140 Citrullus lanatus HOM05D006534 ORTHO05D006434 5.8e-12 74.3 99 67.7
Psat6g213720 Pisum sativum HOM05D006534 ORTHO05D006434 5.8e-12 74.3 99 68.7
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 7.5e-12 73.9 99 49.5
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 9.9e-12 73.6 100 67.0
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.3e-11 73.2 99 68.7
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 1.7e-11 72.8 109 63.3
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 8.3e-11 70.5 101 56.4
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 8.3e-11 70.5 99 61.6
ECA236G3390 Erigeron canadensis HOM05D006534 ORTHO05D006434 8.3e-11 70.5 99 68.7
MD02G1187200 Malus domestica HOM05D006534 ORTHO05D006434 1.9e-10 69.3 99 68.7
GSVIVG01037814001 Vitis vinifera HOM05D006534 ORTHO05D006434 1.9e-10 69.3 101 67.3
arahy.Tifrunner.gnm1.ann1.HPS7HM Arachis hypogaea HOM05D006534 ORTHO05D006434 4.1e-10 68.2 108 51.9
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 4.1e-10 68.2 94 64.9
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 4.1e-10 68.2 100 68.0
Psat4g081440 Pisum sativum HOM05D006534 ORTHO05D006434 1.2e-09 66.6 100 64.0
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 1.6e-09 66.2 99 55.6
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 1.6e-09 66.2 108 62.0
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 1.6e-09 66.2 99 66.7
RcHm_v2.0_Chr2g0108271 Rosa chinensis HOM05D006534 ORTHO05D006434 1.6e-09 66.2 99 67.7
CDE06G1753 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 4.6e-09 64.7 99 66.7
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 4.6e-09 64.7 100 58.0
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 6.0e-09 64.3 99 66.7
PSO170G0329 Papaver somniferum HOM05D006534 ORTHO05D006434 6.0e-09 64.3 100 66.0
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 6.0e-09 64.3 108 44.4
Sabra09G0066500 Salix brachista HOM05D006534 ORTHO05D006434 7.8e-09 63.9 84 71.4
CANSAT01G0131 Cannabis sativa HOM05D006534 ORTHO05D006434 1.3e-08 63.2 101 64.4
Dinv42239 Davidia involucrata HOM05D006534 ORTHO05D006434 1.3e-08 63.2 99 59.6
Duzib248G1096 Durio zibethinus HOM05D006534 ORTHO05D006434 1.3e-08 63.2 99 65.7
CiPaw.05G018800 Carya illinoinensis HOM05D006534 ORTHO05D006434 2.3e-08 62.4 99 60.6
Sp5g05410 Schrenkiella parvula HOM05D006534 ORTHO05D006434 5.1e-08 61.2 122 54.1
Sed0014956 Sechium edule HOM05D006534 ORTHO05D006434 5.1e-08 61.2 110 48.2
HPP92_007768 Vanilla planifolia HOM05D006534 ORTHO05D006434 5.1e-08 61.2 101 61.4
HPP92_007868 Vanilla planifolia HOM05D006534 ORTHO05D006434 5.1e-08 61.2 101 61.4
PGR042G3724 Punica granatum HOM05D006534 ORTHO05D006434 6.6e-08 60.8 99 62.6
Zm00001eb325840 Zea mays HOM05D037660 ORTHO05D037237 6.6e-08 60.8 83 72.3
Solyc09g098300.3 Solanum lycopersicum HOM05D006534 ORTHO05D006434 8.6e-08 60.5 99 63.6
Haze_10267 Corylus avellana HOM05D006534 ORTHO05D006434 1.1e-07 60.1 84 72.6
SMO163G0020 Selaginella moellendorffii HOM05D006534 ORTHO05D006434 1.5e-07 59.7 107 40.2
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 1.9e-07 59.3 99 65.7
Gorai.008G020000 Gossypium raimondii HOM05D006534 ORTHO05D006434 1.9e-07 59.3 99 64.6
BcaC03g18364 Brassica carinata HOM05D006534 ORTHO05D006434 2.5e-07 58.9 98 50.0
CANSAT25G2579 Cannabis sativa HOM05D006534 ORTHO05D006434 2.5e-07 58.9 99 67.7
CANSAT25G3637 Cannabis sativa HOM05D006534 ORTHO05D006434 2.5e-07 58.9 99 67.7
Eucgr.G01204 Eucalyptus grandis HOM05D012446 ORTHO05D006434 2.5e-07 58.9 76 65.8
FAN26G0795 Fragaria x ananassa HOM05D006534 ORTHO05D006434 3.3e-07 58.5 99 67.7
TWI59G0168 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 3.3e-07 58.5 99 64.6
Potri.014G005200 Populus trichocarpa HOM05D006534 ORTHO05D006434 7.3e-07 57.4 99 61.6
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 7.3e-07 57.4 96 62.5
Dinv04040 Davidia involucrata HOM05D006534 ORTHO05D006434 9.5e-07 57.0 34 79.4
Manes.12G115500 Manihot esculenta HOM05D006534 ORTHO05D006434 9.5e-07 57.0 100 60.0
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 1.2e-06 56.6 100 61.0
HPP92_006076 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.2e-06 56.6 87 49.4
A05p02280 Brassica napus HOM05D006534 ORTHO05D006434 2.8e-06 55.5 24 100.0
C04p02710 Brassica napus HOM05D006534 ORTHO05D006434 2.8e-06 55.5 24 100.0
BolC4t21911H Brassica oleracea HOM05D006534 ORTHO05D006434 2.8e-06 55.5 24 100.0
BraA05t19223Z Brassica rapa HOM05D006534 ORTHO05D006434 2.8e-06 55.5 24 100.0
CDE07G0925 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 2.8e-06 55.5 40 67.5
Medtr5g005220 Medicago truncatula HOM05D006534 ORTHO05D006434 3.6e-06 55.1 124 51.6
Prupe.6G219500 Prunus persica HOM05D006534 ORTHO05D006434 4.7e-06 54.7 99 61.6
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 6.2e-06 54.3 41 68.3
BolC8t50863H Brassica oleracea HOM05D005891 ORTHO05D006434 6.2e-06 54.3 41 68.3
Cfa004668 Carpinus fangiana HOM05D006534 ORTHO05D006434 8.1e-06 53.9 99 61.6
Phvul.003G234300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 8.1e-06 53.9 100 59.0


User provided reference genes

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